View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_low_32 (Length: 259)
Name: NF15984_low_32
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 34219353 - 34219104
Alignment:
| Q |
1 |
cactaattatctctagtataatagcaccaaaactaaagacatcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactgnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34219353 |
cactaattatctctagtataatagcaccaaaactaaagacatcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactgaa |
34219254 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnnnnnnngacggaacagatacggggcttaggaaaagagtagtgaatatttctaatttatgaagcaacaaattaaagtcattgaagta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34219253 |
acaaataataaagaaaaaaagacggaacagatacggggcttaggaaaagagtagtgaatatttataatttatgaagcaacaaattaaagtcattgaagta |
34219154 |
T |
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| Q |
201 |
tgcttactaagttcctactactcttcttgttaccccttttgcttcatctc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34219153 |
tgcttactaagttcctactactcttcttgttaccccttttgcttcatctc |
34219104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 34208188 - 34208100
Alignment:
| Q |
10 |
tctctagtataatagcaccaaaactaaagacatcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactg |
98 |
Q |
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|||||||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34208188 |
tctctagtataataacaccgaaactaaagacatctgatttcacggagaaaaatccacgtgctgcatactctggagatatgtaaccactg |
34208100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 34192303 - 34192400
Alignment:
| Q |
1 |
cactaattatctctagtataatagcaccaaaactaaagacatcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactg |
98 |
Q |
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|||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| || | |||||||| |||||||||||| |
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| T |
34192303 |
cactaattgtctctagtataataacgccaaaactaaagacatcagatttcaccgagaaaaatccacgtgtcgcgaattctggagacatgtaaccactg |
34192400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 34192445 - 34192547
Alignment:
| Q |
152 |
tagtgaatatttctaatttatgaagcaacaaattaaagtcat----tgaagtatgcttactaagttcctactactcttcttgttaccccttttgcttcat |
247 |
Q |
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|||||||||||| || ||||| ||| |||||||||||||||| | ||| || |||||||||||||||||| |||||||||| | |||| ||||||| |
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| T |
34192445 |
tagtgaatatttatagtttataaagaaacaaattaaagtcatcaatttaagcatacttactaagttcctactattcttcttgtttctccttcagcttcat |
34192544 |
T |
|
| Q |
248 |
ctc |
250 |
Q |
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||| |
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|
| T |
34192545 |
ctc |
34192547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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