View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15984_low_33 (Length: 256)
Name: NF15984_low_33
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_33 |
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| [»] scaffold0110 (2 HSPs) |
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| [»] scaffold0032 (2 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 13890 - 14124
Alignment:
| Q |
19 |
catactactcatctaaaactttaaagtgggtcccacaaa---ccacaatatatctcacaattgcattttatattaatatataacaccttttcaattcata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13890 |
catactactcatctaaaactttaaagtgggtcccacaaaactccacaatatacctcacaattgcattttatattaatatataacaccttttcaattcata |
13989 |
T |
|
| Q |
116 |
agttaattttataatggtttataaatccaacaatcaagaaaaccacggtagcaatgcaatgccactttgttgagttttgctactctcttaccatgccaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13990 |
agttaattttataatggtttataaatccaacaatcagtaaaaccacggtagcaatgcaatgccactttgttgagttttgctactctcttaccatgccaaa |
14089 |
T |
|
| Q |
216 |
tatctgtctctctctgacatattgccctttgcttc |
250 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
14090 |
tatctgtctctctctgacatattgccttttgcttc |
14124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 21627 - 21861
Alignment:
| Q |
19 |
catactactcatctaaaactttaaagtgggtcccacaaa---ccacaatatatctcacaattgcattttatattaatatataacaccttttcaattcata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21627 |
catactactcatctaaaactttaaagtgggtcccacaaaactccacaatatacctcacaattgcattttatattaatatataacaccttttcaattcata |
21726 |
T |
|
| Q |
116 |
agttaattttataatggtttataaatccaacaatcaagaaaaccacggtagcaatgcaatgccactttgttgagttttgctactctcttaccatgccaaa |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21727 |
agttaattttataatggtttataaatccaacaatcagtaaaaccacggtagcaatgcaatgccactttgttgagttttgctactctcttaccatgccaaa |
21826 |
T |
|
| Q |
216 |
tatctgtctctctctgacatattgccctttgcttc |
250 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
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|
| T |
21827 |
tatctgtctctctctgacatattgccttttgcttc |
21861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 37069910 - 37069676
Alignment:
| Q |
19 |
catactactcatctaaaactttaaagtgggtcccacaaa---ccacaatatatctcacaattgcattttatattaatatataacaccttttcaattcata |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37069910 |
catactactcatctaaaattttaaagtgggtcccacaaaaccccacaatatagctcacaattgcattttatattaatatataacaccttttcaattcata |
37069811 |
T |
|
| Q |
116 |
agttaattttataatggtttataaatccaacaatcaagaaaaccacggtagcaatgcaatgccactttgttgagttttgctactctcttaccatgccaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37069810 |
agttaattttataatggtttataaatccaacaataagtaaaaccacggtagcaatgcaatgccactttgttgagttttgctactctcttaccatgccaaa |
37069711 |
T |
|
| Q |
216 |
tatctgtctctctctgacatattgccctttgcttc |
250 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
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|
| T |
37069710 |
tatctgtctctctctgacatattgccttttgcttc |
37069676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 3739865 - 3739717
Alignment:
| Q |
27 |
tcatctaaaactttaaagtgggtcccacaaa--ccacaatatatctcacaattgcattttatattaatatataacaccttttcaattcataagttaattt |
124 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| |||||||||| |||||||||| ||||||||||||| |||||| |||||||| |||||| ||||||| |
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|
| T |
3739865 |
tcatctaaaactttaaagtagatcctacaaaacccacaatatacctcacaattgtattttatattaatgcataacatcttttcaaatcataatttaattt |
3739766 |
T |
|
| Q |
125 |
tataatggtttataaatccaacaatcaagaaaaccacggtagcaatgca |
173 |
Q |
| |
|
|||||| |||||||||| |||||||| | || ||||||||||||||||| |
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|
| T |
3739765 |
tataatagtttataaattcaacaatctataataccacggtagcaatgca |
3739717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 38609927 - 38609771
Alignment:
| Q |
19 |
catactactcatctaaaactttaaagtgggtcccacaaacc---acaatatatctcacaattgcattttatattaatatataacaccttttcaattcata |
115 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||| ||| | |||| |
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|
| T |
38609927 |
catactactc-tccaaaactttaaaatgggtcccacaaaacctcacaatatacctcacaattgtattttatattaatatataacaccctttaataccata |
38609829 |
T |
|
| Q |
116 |
agttaattttataatggtttataaatccaacaatcaagaaaaccacggtagcaatgca |
173 |
Q |
| |
|
| ||||||||||||| |||| ||||| ||||||| | || |||||||||||| |||| |
|
|
| T |
38609828 |
atttaattttataatagtttttaaattcaacaatgtataataccacggtagcattgca |
38609771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 37613 - 37445
Alignment:
| Q |
82 |
tttatattaatatataacaccttttcaattcataagttaattttataatggtttataaatccaacaatcaagaaaaccacggtagcaatgcaatgccact |
181 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
37613 |
tttatattaacatataacaccttttcaaatcataagttaattttataatggtttataaatccaacaatcagtaaaaccacggtagcaatgcagtgccact |
37514 |
T |
|
| Q |
182 |
ttgttgagttttgctactctcttaccatgccaaatatctgtctctctctgacatattgccctttgcttc |
250 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||| || ||||| | ||||| |||||||| |
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|
| T |
37513 |
ttgatgagttttgctactctcttaccatgccaaatatatgtccctttctgatacattgcattttgcttc |
37445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 37962 - 37926
Alignment:
| Q |
20 |
atactactcatctaaaactttaaagtgggtcccacaa |
56 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
37962 |
atactacccgtctaaaactttaaagtgggtcccacaa |
37926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 49081245 - 49081091
Alignment:
| Q |
20 |
atactactcatctaaaactttaaagtgggtcccacaaa--ccacaatatatctcacaattgcattttatattaatatataacaccttttcaattcataag |
117 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||||||| |||| ||||| |||||||||| |||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
49081245 |
ataccactcatctaaaactttaaa-taggtcccacaaaatccacgatatacctcacaattgtatttgatattaatatataacaccttttcaaatcataat |
49081147 |
T |
|
| Q |
118 |
ttaattttataatggtttataaatccaacaatcaagaaaaccacggtagcaatgca |
173 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| | || |||||||| ||||||| |
|
|
| T |
49081146 |
ttaattttataatagtttataaattcaacaatctataataccacggttccaatgca |
49081091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 36118122 - 36118254
Alignment:
| Q |
19 |
catactactcatctaaaactttaaagtgggtcccacaaacca---caatatatctcacaattgcattttatattaatatataacaccttttcaattcata |
115 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||| ||| | |||| |
|
|
| T |
36118122 |
catactactcttc-aaaactttaaaatgggtcccacaaaacctcccaatatacatcacaattgtattttatattaatatataacaccctttaacaccata |
36118220 |
T |
|
| Q |
116 |
agttaattttataatggtttataaatccaacaat |
149 |
Q |
| |
|
| ||||||||||||| |||| ||||| ||||||| |
|
|
| T |
36118221 |
atttaattttataatagtttttaaattcaacaat |
36118254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 23090299 - 23090213
Alignment:
| Q |
137 |
taaatccaacaatcaagaaaaccacggtagcaatgcaatgccactttgttgagttttgctactctcttaccatgccaaatatctgtc |
223 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23090299 |
taaatccaacaatcagtaaaactaaggtagcaatgcaatgccactttgatgagttttgctactctcttaccatgcgaaatatctgtc |
23090213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 23090683 - 23090574
Alignment:
| Q |
19 |
catactactcatctaaaactttaaagtgggtcccacaaaccacaatatatctcacaattgcattttatattaatatataacaccttttcaattcataagt |
118 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||| |||||||||| ||| |||||||| |||||||||||||||| | |||||| |
|
|
| T |
23090683 |
catactatccatctaaaactttaaagtggatcccacaa-------tatacctcacaattgtatt--atattaat-tataacaccttttcaaattataagt |
23090594 |
T |
|
| Q |
119 |
taattttataatggtttata |
138 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
23090593 |
taattttataatggtttata |
23090574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 38697870 - 38697780
Alignment:
| Q |
59 |
cacaatatatctcacaattgcattttatattaatatataacaccttttcaattcataagttaattttataatggtttataaatccaacaat |
149 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||| ||| | ||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
38697870 |
cacaatatacatcacaattgtattttatattaatatataacaccctttaacaccataatttaattttataatagtttataaattcaacaat |
38697780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 39060703 - 39060758
Alignment:
| Q |
177 |
ccactttgttgagttttgctactctcttaccatgccaaatatctgtctctctctga |
232 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
39060703 |
ccactttgttgagtttaactactctcttaccatgccaaatatcagtccctctctga |
39060758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 13685790 - 13685912
Alignment:
| Q |
31 |
ctaaaactttaaagtgggtcccacaaa---ccacaatatatctcacaattgcattttatattaatatataaca-ccttttcaattcataagttaatttta |
126 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| ||||| |||||||||| ||||||||||||||||||||| ||||| || |||||| ||||||||| |
|
|
| T |
13685790 |
ctaaaactttaaagtggatcccacaaaatcccaccatatacctcacaattgtattttatattaatatataacatcctttcaaaatcataatttaatttta |
13685889 |
T |
|
| Q |
127 |
taatggtttataaatccaacaat |
149 |
Q |
| |
|
|||| ||||||||| ||||||| |
|
|
| T |
13685890 |
taattatttataaattcaacaat |
13685912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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