View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_low_39 (Length: 231)
Name: NF15984_low_39
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_39 |
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| [»] scaffold0595 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 8330430 - 8330234
Alignment:
| Q |
19 |
aaacataacatatattaaagggtggttgatcttttcttcattttctagttctaacacaaaattaacttgannnnnnncttgagaaaatgacaacactaat |
118 |
Q |
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| T |
8330430 |
aaacataacatatattaaagggtggttgatcttttcttcattttccagttctaacacaaaattaacttgatttttttcttgagaaaatgacaatactaat |
8330331 |
T |
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| Q |
119 |
tgaaataggatnnnnnnnttgatgcattgttataacttaccactgcaactccatgttgtactatcactggctcctttttcttagtcacattgttctt |
215 |
Q |
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| T |
8330330 |
tgaaatagaataaaaaaattgatgcattgttataacttaccactgcaactccatgttgtactatcactggctcctttttcttagtcacattgttctt |
8330234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 8337095 - 8337017
Alignment:
| Q |
137 |
ttgatgcattgttataacttaccactgcaactccatgttgtactatcactggctcctttttcttagtcacattgttctt |
215 |
Q |
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| T |
8337095 |
ttgatggattgttgtaacttaccactgcaactccatgttgtactatcactggctccttcttcttagtcacattgctctt |
8337017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 8341283 - 8341219
Alignment:
| Q |
151 |
taacttaccactgcaactccatgttgtactatcactggctcctttttcttagtcacattgttctt |
215 |
Q |
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| T |
8341283 |
taacttaccacaaaaactccatgttgtactatcactggttccttcttcttagtcacattgctctt |
8341219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 5290 - 5226
Alignment:
| Q |
151 |
taacttaccactgcaactccatgttgtactatcactggctcctttttcttagtcacattgttctt |
215 |
Q |
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| T |
5290 |
taacttaccacaaaaactccatgttgtactatcactggttccttcttcttagtcacattgctctt |
5226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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