View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15984_low_4 (Length: 663)

Name: NF15984_low_4
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15984_low_4
NF15984_low_4
[»] chr7 (6 HSPs)
chr7 (319-653)||(6723972-6724305)
chr7 (88-273)||(6724311-6724494)
chr7 (19-70)||(6725168-6725219)
chr7 (428-467)||(22334221-22334260)
chr7 (429-502)||(11466937-11467010)
chr7 (474-518)||(4995902-4995945)
[»] chr8 (9 HSPs)
chr8 (208-519)||(6887069-6887361)
chr8 (306-415)||(8541716-8541825)
chr8 (248-399)||(28290334-28290480)
chr8 (236-297)||(35134664-35134725)
chr8 (455-502)||(13528979-13529026)
chr8 (455-502)||(13618518-13618565)
chr8 (311-401)||(28259511-28259601)
chr8 (422-504)||(35134469-35134551)
chr8 (311-355)||(6359059-6359103)
[»] chr5 (8 HSPs)
chr5 (314-514)||(18179213-18179410)
chr5 (214-454)||(7741250-7741483)
chr5 (444-514)||(20101000-20101070)
chr5 (310-468)||(30791534-30791690)
chr5 (445-513)||(16072261-16072329)
chr5 (236-270)||(14207842-14207876)
chr5 (445-517)||(19571017-19571090)
chr5 (436-501)||(20695926-20695991)
[»] chr4 (8 HSPs)
chr4 (398-517)||(21048325-21048442)
chr4 (444-518)||(18778301-18778375)
chr4 (382-514)||(33520125-33520256)
chr4 (449-514)||(8926417-8926482)
chr4 (218-295)||(33519972-33520049)
chr4 (436-504)||(42498738-42498807)
chr4 (248-295)||(21078136-21078183)
chr4 (428-493)||(9575847-9575912)
[»] chr2 (6 HSPs)
chr2 (424-517)||(31275245-31275338)
chr2 (450-514)||(25461225-25461289)
chr2 (452-504)||(19004576-19004628)
chr2 (398-517)||(21847297-21847415)
chr2 (554-603)||(13589906-13589955)
chr2 (252-285)||(19541577-19541610)
[»] scaffold0280 (1 HSPs)
scaffold0280 (208-394)||(17207-17386)
[»] chr6 (12 HSPs)
chr6 (226-492)||(12971324-12971580)
chr6 (249-295)||(16440361-16440407)
chr6 (364-502)||(12960292-12960423)
chr6 (381-514)||(21604662-21604793)
chr6 (381-469)||(26498765-26498851)
chr6 (234-283)||(26498945-26498994)
chr6 (382-492)||(12966952-12967060)
chr6 (236-295)||(12967138-12967197)
chr6 (382-492)||(12969138-12969246)
chr6 (236-295)||(12969324-12969383)
chr6 (398-517)||(16440501-16440618)
chr6 (614-650)||(23072516-23072552)
[»] chr3 (2 HSPs)
chr3 (214-514)||(21828059-21828352)
chr3 (431-517)||(7779421-7779507)
[»] chr1 (5 HSPs)
chr1 (381-470)||(28411527-28411614)
chr1 (410-516)||(23420498-23420602)
chr1 (428-499)||(23506766-23506837)
chr1 (299-390)||(15297625-15297715)
chr1 (422-517)||(33175505-33175600)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-160; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 319 - 653
Target Start/End: Complemental strand, 6724305 - 6723972
Alignment:
Q  319 aaggattccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctttttaa 418  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724305 aaggattccctgatcaccattatacttctaaattacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctttttaa 6724206  T
Q  419 ttctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtgt 518  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  6724205 ttctatt-atttctaacaatttctgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtatgatttggtga 6724107  T
Q  519 cacacaacttaatgcatgcattgcgcatccaccactagctgaccacttttgaattcttcttagctacatgacatgcaactcatagtgcgcaacacacatc 618  Q
    |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6724106 cacataacttaatacatgcattgcgcatccaccagtagctgaccacttttgaattcttcttagctacatgacatgcaactcatagtgtgcaacacacatc 6724007  T
Q  619 taccagtagttgaaccttatgcttttcttcatctc 653  Q
    |||||||||||||||||||||||||||||||||||    
T  6724006 taccagtagttgaaccttatgcttttcttcatctc 6723972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 88 - 273
Target Start/End: Complemental strand, 6724494 - 6724311
Alignment:
Q  88 tctttgatggggtaccaagcaatatgtatagaacccgagcgtcaaggctgataaggtgaaggctctctctgagggttaattccactttcttaaatcgaaa 187  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  6724494 tctttgatggggtaccaagcaatatgtatagaacccaagcgtcaaggctgataaggtgaaggctctct--gagggttaattccactttcttaaatcgaaa 6724397  T
Q  188 ggtcatattccattggtcggccactaatacatcacaaggtcatattccactttcttaaaacgaaagacatgtcataaactaataat 273  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6724396 ggtcatattccattggtcgtccactaatacatcacaaggtcatattccactttcttaaaacgaaagacttgtcataaactaataat 6724311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 6725219 - 6725168
Alignment:
Q  19 acaaagctttagttgtcctttccgaaatgaaaaaggtctcttgcttggcatg 70  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6725219 acaaagctttagttgtcatttccgaaatgaaaaaggtctcttgcttggcatg 6725168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 467
Target Start/End: Complemental strand, 22334260 - 22334221
Alignment:
Q  428 tttctaacaaattccgctaattaccaagttgaatgacaat 467  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  22334260 tttctaataaattcagctaattaccaagttgaatgacaat 22334221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 502
Target Start/End: Complemental strand, 11467010 - 11466937
Alignment:
Q  429 ttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattactt 502  Q
    |||||| |||||| ||||||| | |||||||||||||||||   | ||||| ||||| |||||| |||||||||    
T  11467010 ttctaataaattctgctaattgctaagttgaatgacaatccatgtggagacaataacctactactttattactt 11466937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 4995945 - 4995902
Alignment:
Q  474 agagacgataacttactaccttattacttgtgtacgatttggtgt 518  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  4995945 agagacgataacttactactttattacttg-gtatgatttggtgt 4995902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 208 - 519
Target Start/End: Complemental strand, 6887361 - 6887069
Alignment:
Q  208 ccactaatacatcacaaggtcatattccactttcttaaaacgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaaaaccaaagaggg 307  Q
    |||||||||||||||  |||||||||| | ||||||||| ||||| |||| |||||||||||||||||| | |||| ||| ||||||        || ||    
T  6887361 ccactaatacatcacggggtcatattctagtttcttaaatcgaaacacatttcataaactaataatcaatcgagttgattccaacaat-------gatgg 6887269  T
Q  308 aggggggattcaaggattccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttca 407  Q
    | | |||||| ||||||||||| ||| ||   | || ||  | |||||||||  ||||||||||||||  || ||||||||||||||||||||| |||||    
T  6887268 atgagggatttaaggattccctaatctccggtaaacgtccgagtcacaacaatctaatctcgcattgggcaggacaattaaaatcctacaaacc-cttca 6887170  T
Q  408 tctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgta 507  Q
    ||||||||           |||||||| ||||||||||||||||||||||||| |||||||||  | |||||||||||||||||  ||| |||||| |||    
T  6887169 tctctttt-----------atttctaataaattccgctaattaccaagttgaacgacaatccttgtggagacgataacttactaatttaatacttgggta 6887081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 8541716 - 8541825
Alignment:
Q  306 ggaggggggattcaaggattccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccactt 405  Q
    |||| ||||||||| ||||||||| |||  | | |||||| | |||||||||||  ||||||||||||||  || | |||||||||||| ||||||||||    
T  8541716 ggagaggggattcatggattccctaatcttcgttatacttttcaatcacaacaacctaatctcgcattgggcagaataattaaaatcctgcaaaccactt 8541815  T
Q  406 catctctttt 415  Q
    ||||||||||    
T  8541816 catctctttt 8541825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 399
Target Start/End: Complemental strand, 28290480 - 28290334
Alignment:
Q  248 cgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaaaaccaaagagggaggggggattcaaggattccctgatcaccatcatacttct 347  Q
    ||||||||||||||||||||||||||||||| ||||| || |||| || ||    || |  |||||| ||||||| |||||| ||| || | | ||||||    
T  28290480 cgaaagacatgtcataaactaataatcaaccgagttagttgcaactaatac---ggatgttgggggg-ttcaaggtttccctaatcgccgttaaacttct 28290385  T
Q  348 aaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaa 399  Q
     |||||||| ||| ||||||| ||||||  || |||||||||| ||||||||    
T  28290384 gaatcacaa-aaactaatctcacattgggcaggacaattaaaaccctacaaa 28290334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 35134725 - 35134664
Alignment:
Q  236 actttcttaaaacgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaaaa 297  Q
    ||||||||||| | ||||||||||||||||||||| || ||| | ||||||||||| |||||    
T  35134725 actttcttaaatcaaaagacatgtcataaactaatgattaacaacgttaatttcaataaaaa 35134664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 502
Target Start/End: Complemental strand, 13529026 - 13528979
Alignment:
Q  455 gttgaatgacaatcctgatagagacgataacttactaccttattactt 502  Q
    |||||||||||||||  || |||||||||||||||||| |||||||||    
T  13529026 gttgaatgacaatccatatggagacgataacttactactttattactt 13528979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 502
Target Start/End: Complemental strand, 13618565 - 13618518
Alignment:
Q  455 gttgaatgacaatcctgatagagacgataacttactaccttattactt 502  Q
    |||||||||||||||  || |||||||||||||||||| |||||||||    
T  13618565 gttgaatgacaatccatatggagacgataacttactactttattactt 13618518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 401
Target Start/End: Complemental strand, 28259601 - 28259511
Alignment:
Q  311 ggggattcaaggattccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaacc 401  Q
    |||||||||||||||| || |||||| | ||| |||| ||||| |||||  |||||||||||| || |  ||||||||||| ||| |||||    
T  28259601 ggggattcaaggattctctaatcaccgttataattctgaatcataacaacataatctcgcattagacataacaattaaaattctaaaaacc 28259511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 504
Target Start/End: Complemental strand, 35134551 - 35134469
Alignment:
Q  422 tatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgt 504  Q
    |||||| |||||| |||||  ||||||||||||||| || ||||||||| || |||||  ||||| ||||  |||||||||||    
T  35134551 tatttacttctaataaattttgctaattaccaagttaaacgacaatccttatggagacagtaactcactattttattacttgt 35134469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 6359059 - 6359103
Alignment:
Q  311 ggggattcaaggattccctgatcaccatcatacttctaaatcaca 355  Q
    ||||||||||||||||||| |||||| | |||| |||||||||||    
T  6359059 ggggattcaaggattccctaatcaccgttatacatctaaatcaca 6359103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 314 - 514
Target Start/End: Original strand, 18179213 - 18179410
Alignment:
Q  314 gattcaaggattccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctt 413  Q
    |||||||||||||  | |||||  | |||||||| |||||||||||  |||||||||||||| ||  |||||||||||||| |||||||||||||||| |    
T  18179213 gattcaaggattctgtaatcacggttatacttctgaatcacaacaacttaatctcgcattgggaaa-acaattaaaatcctgcaaaccacttcatctc-t 18179310  T
Q  414 tttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgattt 513  Q
    ||||||||| ||||||||||| |||||| |||| ||||||||||||| || ||| |  || || || |||||||||||| ||||||||||| || |||||    
T  18179311 tttaattct-tttatttctaataaattctgctatttaccaagttgaaagataatgcatatggatacaataacttactactttattacttgtttatgattt 18179409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 214 - 454
Target Start/End: Complemental strand, 7741483 - 7741250
Alignment:
Q  214 atacatcacaaggtcatattccactttcttaaaacgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaaaaccaaagagggaggggg 313  Q
    |||||||||| |||||||||| |||||||||||  |||| ||||||||||||||||||||||||| |||||| | |||       ||||||  || ||||    
T  7741483 atacatcacatggtcatattctactttcttaaattgaaaaacatgtcataaactaataatcaaccgagttaagtccaa-------caaagacagaagggg 7741391  T
Q  314 gattcaaggattccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctt 413  Q
    ||||||||||||   | |||  | | | |||||| |||||||||| | |||| |||||||||  |  |||||||||||| |  |||||||||||||| ||    
T  7741390 gattcaaggattttgtaatcgacgttaaacttctgaatcacaacatactaatttcgcattgggcaagacaattaaaatcttgtaaaccacttcatctgtt 7741291  T
Q  414 tttaattctatttatttctaacaaattccgctaattaccaa 454  Q
    ||| | | |  |||||||||| ||||||||| |||||||||    
T  7741290 ttttaattttgttatttctaataaattccgccaattaccaa 7741250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 444 - 514
Target Start/End: Original strand, 20101000 - 20101070
Alignment:
Q  444 ctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttg 514  Q
    |||| |||||||||||| ||||||||| || ||||| |||||||||||| |||||||||| ||| ||||||    
T  20101000 ctaactaccaagttgaacgacaatccttatggagactataacttactactttattacttgagtatgatttg 20101070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 310 - 468
Target Start/End: Original strand, 30791534 - 30791690
Alignment:
Q  310 gggggattcaaggattccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcat-tggaaagtacaattaaaatcctacaaaccacttcat 408  Q
    |||||||||||||||| ||| ||| || | |||||||| |||||| | ||  ||||||||||| | || || | |||||||| ||| |||||||||||||    
T  30791534 gggggattcaaggatttcct-atcgccgttatacttctcaatcacca-aacctaatctcgcatgttgatagaaaaattaaaaccctgcaaaccacttcat 30791631  T
Q  409 ctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatc 468  Q
    || || | || ||| |||||||| || ||||||||||||||| ||| ||||| |||||||    
T  30791632 cttttctaaaatct-tttatttcaaataaattccgctaattatcaatttgaacgacaatc 30791690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 513
Target Start/End: Original strand, 16072261 - 16072329
Alignment:
Q  445 taattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgattt 513  Q
    ||||||||||||||| ||||||||||  | ||||| || ||||||||| || ||||||| |||||||||    
T  16072261 taattaccaagttgactgacaatccttgtggagacaattacttactactttcttacttgagtacgattt 16072329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 14207876 - 14207842
Alignment:
Q  236 actttcttaaaacgaaagacatgtcataaactaat 270  Q
    ||||||||||| |||||||||||||||||||||||    
T  14207876 actttcttaaatcgaaagacatgtcataaactaat 14207842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 445 - 517
Target Start/End: Original strand, 19571017 - 19571090
Alignment:
Q  445 taattaccaagttgaatgacaatcctgatagag-acgat-aacttactaccttattacttgtgtacgatttggtg 517  Q
    ||||||| ||||||||||||||||||  ||||| ||||| |||||||||| |||||| |||| ||||||||||||    
T  19571017 taattactaagttgaatgacaatccttgtagagaacgataaacttactactttattatttgt-tacgatttggtg 19571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 501
Target Start/End: Original strand, 20695926 - 20695991
Alignment:
Q  436 aaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattact 501  Q
    |||||||  |||||||| ||||||| ||||||||   | |||||||||||||||||| ||||||||    
T  20695926 aaattcctataattaccgagttgaacgacaatccctgtggagacgataacttactactttattact 20695991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 398 - 517
Target Start/End: Original strand, 21048325 - 21048442
Alignment:
Q  398 aaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttat 497  Q
    |||||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||||||  ||||||||  |  ||||||||||||||    ||||    
T  21048325 aaccacttcatctcttta-aattct-tttatttctaataaattccgctaattaccaagttgaacaacaatccttgtgaagacgataacttacctttttat 21048422  T
Q  498 tacttgtgtacgatttggtg 517  Q
    || ||| |||||||||||||    
T  21048423 tatttgcgtacgatttggtg 21048442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 444 - 518
Target Start/End: Original strand, 18778301 - 18778375
Alignment:
Q  444 ctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtgt 518  Q
    |||||||| |||||||| ||||||||  || || ||||||||||||||| |||||||||| |||| |||||||||    
T  18778301 ctaattacaaagttgaacgacaatccacatggaaacgataacttactactttattacttgagtacaatttggtgt 18778375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 514
Target Start/End: Original strand, 33520125 - 33520256
Alignment:
Q  382 caattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacga 481  Q
    ||||||||| |||  |||||| |||||||||||| ||||| |||||||| ||| ||||||| ||| ||| | ||||||| ||||||  | ||  |||  |    
T  33520125 caattaaaaccctgtaaaccatttcatctcttttaaattc-atttatttataataaattccactatttatcgagttgaacgacaatttttatgaagagaa 33520223  T
Q  482 taacttactaccttattacttgtgtacgatttg 514  Q
    ||||||||||| ||| ||||||| |||||||||    
T  33520224 taacttactactttactacttgtctacgatttg 33520256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 514
Target Start/End: Original strand, 8926417 - 8926482
Alignment:
Q  449 taccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttg 514  Q
    |||||||||||| ||||||||  || ||||||||||||| |||| |||||||||| ||| ||||||    
T  8926417 taccaagttgaacgacaatccctatggagacgataacttgctactttattacttgagtatgatttg 8926482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 33519972 - 33520049
Alignment:
Q  218 atcacaaggtcatattccactttcttaaaacgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaa 295  Q
    ||||| ||||||| ||| ||| ||| ||| | ||||||| ||||||||||||||||||| ||| |||||| |||||||    
T  33519972 atcacgaggtcatgttctactctctcaaatccaaagacaagtcataaactaataatcaatcaaattaattccaacaaa 33520049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 504
Target Start/End: Original strand, 42498738 - 42498807
Alignment:
Q  436 aaattccgctaattaccaagttgaatgacaatcctgatagagacga-taacttactaccttattacttgt 504  Q
    ||||||||||||||||||||||||| ||||||||| ||| | || | | ||||||||| |||||||||||    
T  42498738 aaattccgctaattaccaagttgaacgacaatccttataaaaacaattcacttactacattattacttgt 42498807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 21078136 - 21078183
Alignment:
Q  248 cgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaa 295  Q
    ||||| ||||||||||||||||||||||| | |||||||| |||||||    
T  21078136 cgaaatacatgtcataaactaataatcaatcgagttaattccaacaaa 21078183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 493
Target Start/End: Original strand, 9575847 - 9575912
Alignment:
Q  428 tttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactacc 493  Q
    ||||||| | ||||||||||||| ||||||||| |||||||   |||||||||| || ||||||||    
T  9575847 tttctaatatattccgctaattatcaagttgaacgacaatctctatagagacgacaatttactacc 9575912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 424 - 517
Target Start/End: Original strand, 31275245 - 31275338
Alignment:
Q  424 tttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtg 517  Q
    ||||||||||| || |||  ||| ||||||||| |||  |||||||| || |||||||||||||||||| ||||||||||| ||||||||||||    
T  31275245 tttatttctaataagttcttctatttaccaagtggaacaacaatccttatggagacgataacttactactttattacttgtttacgatttggtg 31275338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 450 - 514
Target Start/End: Original strand, 25461225 - 25461289
Alignment:
Q  450 accaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttg 514  Q
    ||||||||||| ||||||||   | |||||||||||||||||| ||||||||||||||| |||||    
T  25461225 accaagttgaacgacaatccatttggagacgataacttactactttattacttgtgtacaatttg 25461289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 504
Target Start/End: Complemental strand, 19004628 - 19004576
Alignment:
Q  452 caagttgaatgacaatcctgatagagacgataacttactaccttattacttgt 504  Q
    ||||||||| ||||||||  ||||||||||||||||||||| |||||| ||||    
T  19004628 caagttgaacgacaatccatatagagacgataacttactactttattatttgt 19004576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 517
Target Start/End: Complemental strand, 21847415 - 21847297
Alignment:
Q  398 aaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcc-tgatagagacgataacttactacctta 496  Q
    |||||||| |||||||||  ||| | || |||||||| |||| || |||||||| ||||||||||||||||| ||| ||| |||||| |||| ||| |||    
T  21847415 aaccactttatctctttt--attattttgatttctaataaatcccactaattactaagttgaatgacaatccatga-agatacgatagcttagtacttta 21847319  T
Q  497 -ttacttgtgtacgatttggtg 517  Q
     |||||| | ||||||||||||    
T  21847318 gttacttatttacgatttggtg 21847297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 603
Target Start/End: Original strand, 13589906 - 13589955
Alignment:
Q  554 tagctgaccacttttgaattcttcttagctacatgacatgcaactcatag 603  Q
    ||||||||||||||||||| |||||||| | |  ||||||||||||||||    
T  13589906 tagctgaccacttttgaatccttcttagatgcgcgacatgcaactcatag 13589955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 19541577 - 19541610
Alignment:
Q  252 agacatgtcataaactaataatcaaccaagttaa 285  Q
    |||||||||||||||||||||| |||||||||||    
T  19541577 agacatgtcataaactaataattaaccaagttaa 19541610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 394
Target Start/End: Original strand, 17207 - 17386
Alignment:
Q  208 ccactaatacatcacaaggtcatattccactttcttaaaacgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaaaaccaaagaggg 307  Q
    ||||| |||||||||  |||||||||| ||||||||||| | |||||||  ||||| ||||||||||||||||||||||| |       || ||||| ||    
T  17207 ccactgatacatcacggggtcatattctactttcttaaatctaaagacaattcatacactaataatcaaccaagttaattcc-------acgaaagacgg 17299  T
Q  308 aggggggattcaaggattccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcct 394  Q
    | ||| |||||||||||||| | ||| |  | |||||||  || ||||||||  ||||||||||||||  |  ||||||||||||||    
T  17300 aagggagattcaaggattccataatcgctgttatacttcagaagcacaacaatataatctcgcattgggcataacaattaaaatcct 17386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 226 - 492
Target Start/End: Complemental strand, 12971580 - 12971324
Alignment:
Q  226 gtcatattccactttcttaaaacgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaaaaccaaagagggaggggggattcaaggatt 325  Q
    ||||| ||| ||||||||||| ||||||  | ||||||||||||||||||||| |||||||| |||       |||| | ||| ||||||||||||||||    
T  12971580 gtcatgttctactttcttaaatcgaaagttaggtcataaactaataatcaaccgagttaattccaa-------caaataaggaagggggattcaaggatt 12971488  T
Q  326 ccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcattgga-aagtacaattaaaatcctacaaaccacttcatctctttttaattctat 424  Q
    | || ||| |||| |||||||| || ||| | ||  || ||| | ||| || |||| ||||||||| |  |||||||||||||||| || | |||||  |    
T  12971487 ctctaatcgccattatacttctgaaccac-ataacctattcttgtatttgacaagt-caattaaaacctcacaaaccacttcatcttttctaaattc--t 12971392  T
Q  425 ttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactac 492  Q
     || |||||| ||||||||| ||||||| |||||||||| |||||  |  |||||||||||| |||||    
T  12971391 ctacttctaataaattccgccaattaccgagttgaatgataatccctacggagacgataactgactac 12971324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 16440361 - 16440407
Alignment:
Q  249 gaaagacatgtcataaactaataatcaaccaagttaatttcaacaaa 295  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  16440361 gaaagacatgtcataaactaataatcaaccacgttaattccaacaaa 16440407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 364 - 502
Target Start/End: Complemental strand, 12960423 - 12960292
Alignment:
Q  364 atctcgcattggaaagtacaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatga 463  Q
    |||||||||||| ||| |||||||||||||||||     ||| |||||||||  ||| | |||| || ||| ||||| | ||||||||||||||||| ||    
T  12960423 atctcgcattgggaaggacaattaaaatcctaca-----ctttatctctttt--attttttttacttttaagaaatttctctaattaccaagttgaacga 12960331  T
Q  464 caatcctgatagagacgataacttactaccttattactt 502  Q
    ||||| | || |||||| |||||||  || |||||||||    
T  12960330 caatctttatggagacggtaacttatgactttattactt 12960292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 514
Target Start/End: Complemental strand, 21604793 - 21604662
Alignment:
Q  381 acaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacg 480  Q
    ||||||||| |||| |||| ||||||||||| ||||||||||| |||||| ||  ||||||||||||||| | ||||||  ||||||| |  |  ||| |    
T  21604793 acaattaaattcctgcaaatcacttcatctc-ttttaattcta-ttatttatagtaaattccgctaattatctagttgagcgacaatctttgtgtagatg 21604696  T
Q  481 ataacttactaccttattacttgtgtacgatttg 514  Q
    ||| |||||||| |||||| ||| ||| ||||||    
T  21604695 atagcttactactttattatttgcgtaagatttg 21604662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 469
Target Start/End: Complemental strand, 26498851 - 26498765
Alignment:
Q  381 acaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcc 469  Q
    |||||||||| || |||||| ||||| ||| || | ||||||  ||| |||||| ||||||| ||||||||||||||||| ||||||||    
T  26498851 acaattaaaacccaacaaacaacttcgtcttttataaattct--ttacttctaataaattcctctaattaccaagttgaacgacaatcc 26498765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 26498994 - 26498945
Alignment:
Q  234 ccactttcttaaaacgaaagacatgtcataaactaataatcaaccaagtt 283  Q
    |||||||||||||  ||| |||| ||||||||||||||||||||||||||    
T  26498994 ccactttcttaaattgaaggacaagtcataaactaataatcaaccaagtt 26498945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 492
Target Start/End: Complemental strand, 12967060 - 12966952
Alignment:
Q  382 caattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacga 481  Q
    ||||||||| |  |||||||||||||||| || | |||||| |  | |||||| |||| |||| ||||||| |||||||||| |||||  |  |||||||    
T  12967060 caattaaaacctcacaaaccacttcatcttttctaaattctct--acttctaataaatgccgccaattaccgagttgaatgataatccctacggagacga 12966963  T
Q  482 taacttactac 492  Q
    |||||||||||    
T  12966962 taacttactac 12966952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 12967197 - 12967138
Alignment:
Q  236 actttcttaaaacgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaa 295  Q
    ||||||||||| ||||||  | |||||||||||||||| |||| |||||||| |||||||    
T  12967197 actttcttaaatcgaaagttaggtcataaactaataattaaccgagttaattccaacaaa 12967138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 492
Target Start/End: Complemental strand, 12969246 - 12969138
Alignment:
Q  382 caattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacga 481  Q
    ||||||||| |  |||||||||||||||| || | |||||| |  | |||||| ||||||||| ||||||| |||||||||| |||||  |  |||||||    
T  12969246 caattaaaacctcacaaaccacttcatcttttctaaattctct--acttctaataaattccgccaattaccgagttgaatgataatccctacggagacga 12969149  T
Q  482 taacttactac 492  Q
    ||||| |||||    
T  12969148 taactgactac 12969138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 12969383 - 12969324
Alignment:
Q  236 actttcttaaaacgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaa 295  Q
    ||||||||||| ||||||  | |||||||||||||||| |||| |||||||| |||||||    
T  12969383 actttcttaaatcgaaagttaggtcataaactaataattaaccgagttaattccaacaaa 12969324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 517
Target Start/End: Original strand, 16440501 - 16440618
Alignment:
Q  398 aaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttat 497  Q
    ||||| || |||||||||  ||| |||||| || ||| |||||||||||||| |  |||||||  || |||||  ||||| |||||||||||||| || |    
T  16440501 aaccagtttatctctttt--attttatttacttataataaattccgctaattgcttagttgaacaacgatccttgtagaggcgataacttactacttttt 16440598  T
Q  498 tacttgtgtacgatttggtg 517  Q
    ||| | |||| |||||||||    
T  16440599 tacctatgtatgatttggtg 16440618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 614 - 650
Target Start/End: Complemental strand, 23072552 - 23072516
Alignment:
Q  614 acatctaccagtagttgaaccttatgcttttcttcat 650  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  23072552 acatgtaccagtagttgatccttatgcttttcttcat 23072516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 214 - 514
Target Start/End: Complemental strand, 21828352 - 21828059
Alignment:
Q  214 atacatcacaaggtcatattccactttcttaaaacgaaagacatgtcataaactaataatcaaccaagttaatttcaacaaaaaccaaagagggaggggg 313  Q
    ||||||||||||| ||| | |  | |||||||  ||||||||| |||||||||||| |||||||||| |||||| ||| ||| |       || ||||||    
T  21828352 atacatcacaaggccatgtcctccgttcttaattcgaaagacaggtcataaactaacaatcaaccaaattaattccaagaaagat------ggaaggggg 21828259  T
Q  314 gattcaaggattccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaatcctacaaacca-cttcatctct 412  Q
    |||||||||||||||| |||  ||| ||| || | |||||||| ||  |||||||||||||  ||| |||  ||||| ||| ||||| | ||||||||||    
T  21828258 gattcaaggattccctaatcgtcattataattatgaatcacaa-aacctaatctcgcattgagaaggacatgtaaaaccctgcaaacgaacttcatctct 21828160  T
Q  413 ttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatt 512  Q
    | |||| |   ||||||||||| ||||||| ||||||||  | || || |||||||    | ||||| |||||||||||| |||||||||| ||| ||||    
T  21828159 tattaaattattttatttctaataaattccactaattactgattttaacgacaatctcagtggagac-ataacttactactttattacttgcgtatgatt 21828061  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 517
Target Start/End: Complemental strand, 7779507 - 7779421
Alignment:
Q  431 ctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtg 517  Q
    |||| |||||| |||| |||||| |||||||||||||||| || ||||| ||||||||| | |||| ||||||  || |||||||||    
T  7779507 ctaataaattctgctatttaccatgttgaatgacaatccttatggagactataacttacaagcttactacttgattatgatttggtg 7779421  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 470
Target Start/End: Original strand, 28411527 - 28411614
Alignment:
Q  381 acaattaaaatcctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcct 470  Q
    ||||||||||  ||||||||||||||||||||||| |||| | || |||||||| ||||||||||||||| | ||||||||| |||||||    
T  28411527 acaattaaaacactacaaaccacttcatctctttt-aattttgtt-atttctaataaattccgctaattaacgagttgaatggcaatcct 28411614  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 516
Target Start/End: Complemental strand, 23420602 - 23420498
Alignment:
Q  410 tctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacg 509  Q
    ||||||| ||||||||   |||||| |||||| | ||||| | |||||||| |||||||||  | |||||||||||||||||| ||||||||||| ||||    
T  23420602 tctttttcattctattcgcttctaataaattc-gttaattgctaagttgaacgacaatccttgtggagacgataacttactactttattacttgt-tacg 23420505  T
Q  510 atttggt 516  Q
    |||||||    
T  23420504 atttggt 23420498  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 428 - 499
Target Start/End: Original strand, 23506766 - 23506837
Alignment:
Q  428 tttctaacaaattccgctaattaccaagttgaatgacaatc-ctgatagagacgataacttactaccttatta 499  Q
    ||||||| |||||| |||||||||||||||||| |||| || ||| |||||||||||||||||||| ||||||    
T  23506766 tttctaataaattctgctaattaccaagttgaacgacattcactg-tagagacgataacttactactttatta 23506837  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 15297715 - 15297625
Alignment:
Q  299 caaagagggaggggggattcaaggattccctgatcaccatcatacttctaaatcacaacaaagtaatctcgcattggaaagtacaattaaaa 390  Q
    |||||| ||| | |||||||||||||||||| |||| | | |||| ||| |||||||| ||  ||||||||||||||  |||||||||||||    
T  15297715 caaagacggatgagggattcaaggattccctaatcatcgttatacctctgaatcacaa-aacctaatctcgcattgggcagtacaattaaaa 15297625  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 517
Target Start/End: Complemental strand, 33175600 - 33175505
Alignment:
Q  422 tatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtg 517  Q
    |||||| |||||| ||||||| |||||| | |||||||| |||||||    | |||| ||||||||||||  ||||||||||| || |||||||||    
T  33175600 tatttacttctaataaattcctctaattgctaagttgaacgacaatctatgtggagaagataacttactattttattacttgtttatgatttggtg 33175505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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