View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_low_41 (Length: 228)
Name: NF15984_low_41
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 38002671 - 38002444
Alignment:
| Q |
1 |
attggaggattcaaaacgacctctatcaaaaatagttttagctnnnnnnntaagattatttttgtccttatatatatgccaaaccataacaatctagtta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38002671 |
attggaggattcaaaacgacctctatcaaaaatagttttagctaaaaaaataagattatttttgtccttatatatatgccaaaccataaaaatctagtta |
38002572 |
T |
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| Q |
101 |
gaggtagaaacaccaacgccatttgaggagagattcaaatgtaaccaatcattaagacctggcctagagaatttactcaaatccctttaataagatgatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38002571 |
gaggtagaaacaccaacgccatttgaggagagattcaaatgtaaccaatcattaagacctggcctagagaatttactcaaatccctttaataagatgatc |
38002472 |
T |
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| Q |
201 |
caaaagttctcaaacgtagtcacaatct |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38002471 |
caaaagttctcaaacgtagtcacaatct |
38002444 |
T |
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