View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_low_5 (Length: 619)
Name: NF15984_low_5
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 605
Target Start/End: Complemental strand, 44801805 - 44801214
Alignment:
| Q |
8 |
tagtatatgttgaaacaaaaattgtcgctagaataactataagcttaacaaaatcaaaatcattattaaccgcataccaagcttcatcacaactcatgta |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44801805 |
tagtatatgttgaaacaaaaattgtcgctagaataactataagcttaacaaaatcaaaatcatta---accgcataccaagcttcatcacaactcatgta |
44801709 |
T |
|
| Q |
108 |
ggttttaggaagaaagaaaatctagcgtcaaggaaatgtctacggctataagttgattagaatatgaactagtgaaccggacaaactaaaccaatctaat |
207 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44801708 |
ggttttaggaagaaagaaaatctagtgtcaaggaaatgtctacggctataagttgattaga---tgaactagtgaaccggacaaactaaaccaatctaat |
44801612 |
T |
|
| Q |
208 |
atgtaaaatacaacgagcactatgcaaatagnnnnnnnaattaaattgtagtaaaatttatgtcttacatatgtgatggtnnnnnnnngtccactttcac |
307 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44801611 |
atgtaaaatacaacgagcactatgcaaatagtttttttaattaaattgtagtaaaatttatgtcttacatatgtgatggtaaaaaaaagtccactttcac |
44801512 |
T |
|
| Q |
308 |
acggtccctttcataagaaaccatctctctcaaacacttagaaaccctaactttcatctgtgtcgccccttcagctccttcttccatattcatagacttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44801511 |
acggtccctttcataagaaaccatctctctcaaacacttagaaaccctaactttcatctgtgtcgccccttcagctccttcttccatattcatagacttg |
44801412 |
T |
|
| Q |
408 |
tctatcgatcgtcaccttcttctttgtcccacaaacatcttattactacctcacagtatagctctcactcacaaaattattacatgtcattattcaatgg |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44801411 |
tctatcgatcgtcaccttcttctttgtcccacaaacatcttattactacctcacagtatagctctcactcacaaaattattacatgtcattgttcaatgg |
44801312 |
T |
|
| Q |
508 |
acacaatgtgcacctgatcatatttgttgcacctccttagtccacttctaggttgaagccaagaggtacaacccctcatttaatactttggtggtggt |
605 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44801311 |
acacaatgtccacctgatcatatttgttgcacctccttagtccacttctaggttgaagccaagaggtacaacccctcatttaatactttggtggtggt |
44801214 |
T |
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