View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_low_8 (Length: 485)
Name: NF15984_low_8
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 221 - 469
Target Start/End: Original strand, 39669697 - 39669947
Alignment:
| Q |
221 |
aactaaaagtaaattagtgctatattatacacaaatttattttttagcatcggatcaatatatcacgttatatttcatctaattcagtggtgagattata |
320 |
Q |
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| T |
39669697 |
aactaaaagtaaattagtgctatattatacacaaatttattttttaacatcggatcaatatatcatgttatatctcatctaattcagtggtgagattata |
39669796 |
T |
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| Q |
321 |
cattggatcaatacgtcaaatttattttctaacattggtacataatatatctcacc--nnnnnnnnnnnnnaggggaaaatatatctcacttgtgagcaa |
418 |
Q |
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| T |
39669797 |
cattggatcaatacgtcaaatttattttctaacattggtacataatatatctcaccgttttccttttttttaggggaaaatatatctcacttgtgaacaa |
39669896 |
T |
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| Q |
419 |
caaaattatcttattttatgtatttgaatccataaaataaatgctgtatat |
469 |
Q |
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| T |
39669897 |
cagaattaacttattttatatatttgaatccataaaataaatgctttatat |
39669947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 39668598 - 39668783
Alignment:
| Q |
10 |
gaagaatatgcgggtcttggcaaaaaaggttccnnnnnnngtagaggagnnnnnnnnggttccatttgaaattgatatgttaaataaaataaaaggattt |
109 |
Q |
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| T |
39668598 |
gaagaatatgcgggtcttggcaaaaaaggttcctttttttgtaaaggaaaaaaaaaaggttccatttgaaattgatatgttaaataaaataaaaggattt |
39668697 |
T |
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| Q |
110 |
aatgcaaagcaggtttagtcgatgcggggacctacaataatcatcaattcaattttaagcattattttgtagtctttgcctataca |
195 |
Q |
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| T |
39668698 |
aatgcaaagcaggtttagtcgatgcggggacctacaataatcatcaattcaattttaagcattattttgtagtctttgcctataca |
39668783 |
T |
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