View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15985_high_8 (Length: 364)
Name: NF15985_high_8
Description: NF15985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15985_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 179948 - 179619
Alignment:
| Q |
16 |
catttagaataagatatgatttggtgttggaagggttggtggccatgttgttgaaaataggatcgtatggtgttgttaagcttcaagaaaatctgatacc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
179948 |
catttagaataagatatgatttggtgttggaagggttggtggccatgttgttgaaaataggatcttatggtgctgttaagcttcaagaaaatctgatacc |
179849 |
T |
|
| Q |
116 |
atataagagtttgaatataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagag |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
179848 |
atataagagtttgaatataagagttg---------ttgtattgaattatgtattgctgatacatgtatttaagtacaacgatatgccttagcattaagag |
179758 |
T |
|
| Q |
215 |
ataactacctagcttattttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
179757 |
ataactacctagcttattttatggtaacaactttatctacaaacaaacagctatgcaattcaaatttgaaataataacaagagatatgtattgagcgtat |
179658 |
T |
|
| Q |
315 |
gacagatcactatccttaacattaagattattttcttgg |
353 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
179657 |
gacagatcactatccttaacgttaggattattttgttgg |
179619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 1700332 - 1700029
Alignment:
| Q |
16 |
catttagaataagatatgatttggtgttggaagggttggtggccatgttgttgaaaataggatcgtatggtgttgttaagcttcaagaaaatctgatacc |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
1700332 |
catttagaataagagatgatttggtgttggaagggttggtggccatgttg---aaaataggatcgtgtagtgctgttaagcttcaagaaaatctgatacc |
1700236 |
T |
|
| Q |
116 |
atataagagtttgaatataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagag |
214 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
1700235 |
atataagagtttgaat--------------ggcaattgtttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagag |
1700150 |
T |
|
| Q |
215 |
ataactacctagcttattttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
1700149 |
ataactacctagcttattttatggtaacagctttatctaca----aacagctgtgcaattcaaatttgaaataataacaagagata---------tgtat |
1700063 |
T |
|
| Q |
315 |
gacagatcactatccttaacattaagattatttt |
348 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
1700062 |
gacagatcactatccttaacattaggattatttt |
1700029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 131 - 348
Target Start/End: Complemental strand, 1704652 - 1704447
Alignment:
| Q |
131 |
tataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagctt |
229 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
1704652 |
tataagagtttgaatggcaattgtttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
1704553 |
T |
|
| Q |
230 |
attttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatcc |
329 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
1704552 |
attttatggtaacagctttatctaca----aacagctgtgcaattcaaatttgaaataataacaagagata---------tgtatgacagatcactatcc |
1704466 |
T |
|
| Q |
330 |
ttaacattaagattatttt |
348 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
1704465 |
ttaacattaggattatttt |
1704447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 131 - 348
Target Start/End: Original strand, 20613285 - 20613489
Alignment:
| Q |
131 |
tataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagctt |
229 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
20613285 |
tataagagtttgaatggcaattgttttta-ttatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
20613383 |
T |
|
| Q |
230 |
attttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatcc |
329 |
Q |
| |
|
||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
20613384 |
attatatggtaacagctttatct----acaaacagctgtgcaattcaaatttgaaataataacaagagata---------tgtatgacagatcactatcc |
20613470 |
T |
|
| Q |
330 |
ttaacattaagattatttt |
348 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
20613471 |
ttaacattaggattatttt |
20613489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 353
Target Start/End: Original strand, 20625212 - 20625251
Alignment:
| Q |
314 |
tgacagatcactatccttaacattaagattattttcttgg |
353 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
20625212 |
tgacagatcactatccttaacattaggattattttgttgg |
20625251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 131 - 353
Target Start/End: Original strand, 35919911 - 35920118
Alignment:
| Q |
131 |
tataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagctt |
229 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
35919911 |
tataagagtttgaatggcaattgtttt-aattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
35920009 |
T |
|
| Q |
230 |
attttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatcc |
329 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
35920010 |
attctatggtaacaactttatct----acaaacagctgtgcaattcaaatttgaaataataac--gagata---------tgtatgacagatcactatcc |
35920094 |
T |
|
| Q |
330 |
ttaacattaagattattttcttgg |
353 |
Q |
| |
|
||||||||| ||||||||| |||| |
|
|
| T |
35920095 |
ttaacattaggattattttgttgg |
35920118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University