View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15985_high_9 (Length: 358)
Name: NF15985_high_9
Description: NF15985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15985_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 38060994 - 38060640
Alignment:
| Q |
1 |
tctaaacttcttcagaaatgaacaaagtataccttcacatttgtccaagggacacaaatagaattccttgaagcatctaagttcataatagattaatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38060994 |
tctaaacttcttcagaaatgaacaaagtataccttcacatttgtccaagggacacagatagaattccttgaagcatctaagttcataatagagtaatgta |
38060895 |
T |
|
| Q |
101 |
atatgctttgttatttctcttttatgtggtgagtttaattcaaattagtcaataataatagtttgcttgtagtgcaagtaactgtgtaggtagagttagt |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||||| | |||||||||| |
|
|
| T |
38060894 |
atatgcttcgttatttctcttttatgtggtgagtttaattcaaattagttaagaataatagttttcttgtagcgcaagtaactgtgtcgatagagttagt |
38060795 |
T |
|
| Q |
201 |
tttctgttataacaactagtttgttagtgttttatttctgttatacacttgagcaattatagctctttcaagtgttgtataaattgatgatgtgaataag |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
38060794 |
tttctgttataacaactagtttgttcgtgttttatttctgttatgtacttgagcaattatagctctttcaagtgttgaataaattgatgatgtcgataag |
38060695 |
T |
|
| Q |
301 |
aaaatcacaacttagtgattcattgaatataactgtgcattctatttctccttca |
355 |
Q |
| |
|
||||| |||||||||||||||||||||||| || |||||| |||||||||||||| |
|
|
| T |
38060694 |
aaaattacaacttagtgattcattgaatatgaccgtgcatcctatttctccttca |
38060640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38073794 - 38073863
Alignment:
| Q |
1 |
tctaaacttcttcagaaatgaacaaagtataccttcacatttgtccaagggacacaaatagaattccttg |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| |||| |
|
|
| T |
38073794 |
tctaaacttcttcagaaatgaacaaagtataccttctcatgtgtccaagggacgcaaatagaatttcttg |
38073863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 38059460 - 38059584
Alignment:
| Q |
1 |
tctaaacttcttcagaaatgaacaaagtatacct--tcacatttgtccaagggacacaaatagaattccttgaagcatctaagttcataatagattaatg |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| || ||| ||| ||||||||| || |||| |||||| |||| |||| |||||||||| ||||| |
|
|
| T |
38059460 |
tctaaacttcttcagaaatgaacagagtataccttctctcatgtgttcaagggacataa--agaaatccttgtagcagataaggtcataatagaataatg |
38059557 |
T |
|
| Q |
99 |
taatatgctttgttatttctcttttat |
125 |
Q |
| |
|
|||||||||| |||||| |||||||| |
|
|
| T |
38059558 |
caatatgcttttttatttttcttttat |
38059584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38082876 - 38082935
Alignment:
| Q |
1 |
tctaaacttcttcagaaatgaacaaagtataccttcacatttgtccaagggacacaaata |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
38082876 |
tctaaacttcttcagaaatgaacaaagtataccttctcttgtgtccaagggacacaaata |
38082935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38087304 - 38087365
Alignment:
| Q |
1 |
tctaaacttcttcagaaatgaacaaagtataccttcacatttgtccaagggacacaaataga |
62 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |
|
|
| T |
38087304 |
tctaaatttcttcagaaatgaacaaagtataccttctcatgtgtccaagggacgcaaataga |
38087365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University