View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15985_low_12 (Length: 255)
Name: NF15985_low_12
Description: NF15985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15985_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 53096371 - 53096117
Alignment:
| Q |
1 |
ccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggactagaaa |
100 |
Q |
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| T |
53096371 |
ccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggacgagaaa |
53096272 |
T |
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| Q |
101 |
tggaaatagttttgatgttggaacagttcattctgctagtttggacatttttcctgaaactaaaaatggtattcttcagcagcagtgccattatcttgac |
200 |
Q |
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| T |
53096271 |
tggaaatagttttgatgttggaacagttcattctgctagtttggacatttttcctgaaactaaaaatggtattcttcagcagcagtgccattatcttgac |
53096172 |
T |
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| Q |
201 |
atatctctctctaaggatcctccgatgcctgcaaaatgtgatcctctaaagcaag |
255 |
Q |
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| T |
53096171 |
atatctctctctaaggatcctccgatgcctgcaaaatgtgatcctctaaagcaag |
53096117 |
T |
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Back To:
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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 1369337 - 1369483
Alignment:
| Q |
1 |
ccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggactagaaa |
100 |
Q |
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|||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||| ||| | | |||||||||||||||||||| ||||||| ||||| |
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| T |
1369337 |
ccaaagaatctgagcgttatgaatgtcaccaaaccagagttcaccaaagatcaaaatgtata-tcctaatcaaagcacaaaactctaatgggatgagaaa |
1369435 |
T |
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| Q |
101 |
tggaaatagttttgatgttggaacagttcattctgctagtttggacat |
148 |
Q |
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| T |
1369436 |
tggaaatagttttgatgctggaacagttcatactactagtttggacat |
1369483 |
T |
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