View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15985_low_4 (Length: 498)

Name: NF15985_low_4
Description: NF15985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15985_low_4
NF15985_low_4
[»] chr4 (9 HSPs)
chr4 (246-470)||(15186023-15186242)
chr4 (215-254)||(15186424-15186463)
chr4 (72-117)||(28449180-28449225)
chr4 (111-158)||(15186463-15186510)
chr4 (72-111)||(52543417-52543456)
chr4 (74-108)||(52543695-52543729)
chr4 (72-112)||(25423918-25423958)
chr4 (72-104)||(35420669-35420701)
chr4 (72-104)||(42823778-42823810)
[»] chr8 (2 HSPs)
chr8 (72-104)||(9175014-9175046)
chr8 (72-104)||(2728234-2728266)
[»] chr2 (5 HSPs)
chr2 (73-104)||(29182170-29182201)
chr2 (72-110)||(2265363-2265401)
chr2 (74-104)||(3172500-3172530)
chr2 (74-112)||(40125257-40125295)
chr2 (72-109)||(45442662-45442699)
[»] chr1 (5 HSPs)
chr1 (72-103)||(32906206-32906237)
chr1 (75-117)||(48857213-48857255)
chr1 (72-104)||(26207280-26207312)
chr1 (72-104)||(32420100-32420132)
chr1 (72-104)||(49073693-49073725)
[»] chr7 (4 HSPs)
chr7 (74-104)||(25046267-25046297)
chr7 (74-104)||(30513307-30513337)
chr7 (72-104)||(36687229-36687261)
chr7 (72-104)||(46759908-46759940)
[»] chr5 (3 HSPs)
chr5 (75-105)||(27570057-27570087)
chr5 (72-108)||(38452362-38452398)
chr5 (72-104)||(42553644-42553676)
[»] chr3 (6 HSPs)
chr3 (72-110)||(38232237-38232275)
chr3 (72-104)||(863283-863315)
chr3 (72-104)||(28452149-28452181)
chr3 (72-104)||(35177257-35177289)
chr3 (72-104)||(40370287-40370319)
chr3 (72-104)||(47114489-47114521)
[»] chr6 (3 HSPs)
chr6 (72-109)||(14656226-14656263)
chr6 (72-104)||(17765341-17765373)
chr6 (72-104)||(19129486-19129518)
[»] scaffold0472 (1 HSPs)
scaffold0472 (72-112)||(7230-7270)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 246 - 470
Target Start/End: Complemental strand, 15186242 - 15186023
Alignment:
Q  246 tttcttaatttctcaagtttcatgtgctttatatataagaaaggaagtttgtgagctgtaaagccttgatttaaggaaaggaatacagagactttcatac 345  Q
    |||||||||||||||||||||||||| ||||||    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  15186242 tttcttaatttctcaagtttcatgtgatttata----agaaaggaagtttgtgagctgtaaagccttgatttaaggaaaggaata-atagactttcatac 15186148  T
Q  346 ttattgcaaacagttaaagagtaaaagacagtcactttcttcgagttttttggattatgaagctaacactttttagacagatcctatttgtcttaacagt 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15186147 ttattgcaaacagttaaagagtaaaagacagtcactttcttcgagttttttggattatgaagctaacactttttagacagatcctatttgtcttaacagt 15186048  T
Q  446 ggaagccattttctgtactaatttt 470  Q
    |||||||||||||||||||||||||    
T  15186047 ggaagccattttctgtactaatttt 15186023  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 15186463 - 15186424
Alignment:
Q  215 ttatatttctttaactgttttcaagtctatatttcttaat 254  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15186463 ttatatttctttaactgttttcaagtctatatttcttaat 15186424  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 28449180 - 28449225
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttaggcttaaaactata 117  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||    
T  28449180 gacatatttgcaaggaccaaaaccatattttagccttaaaactata 28449225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 15186510 - 15186463
Alignment:
Q  111 aactatagtttaatccatgaaacagattcagttaattaattttcaagt 158  Q
    |||| ||||||||| ||||||||| ||||| |||||||||||||||||    
T  15186510 aactgtagtttaattcatgaaacaaattcaattaattaattttcaagt 15186463  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 52543456 - 52543417
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttaggcttaaa 111  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  52543456 gacatatttgcaaggaccaaaaccatattttagccttaaa 52543417  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 52543695 - 52543729
Alignment:
Q  74 catatttgcaaggaccaaaatcatattttaggctt 108  Q
    |||||||||||| ||||||||||||||||||||||    
T  52543695 catatttgcaagaaccaaaatcatattttaggctt 52543729  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 25423958 - 25423918
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttaggcttaaaa 112  Q
    |||||||||||| ||||||||| |||||||||| |||||||    
T  25423958 gacatatttgcagggaccaaaaccatattttagccttaaaa 25423918  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 35420669 - 35420701
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||||||||||||| ||||||||||    
T  35420669 gacatatttgcaaggaccaaaaccatattttag 35420701  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 42823810 - 42823778
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  42823810 gacatatttgcagggaccaaaatcatattttag 42823778  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 9175046 - 9175014
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||||||||||||||||||||||||    
T  9175046 gacatatttgcaaggaccaaaatcatattttag 9175014  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 2728266 - 2728234
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  2728266 gacatatttgcagggaccaaaatcatattttag 2728234  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Complemental strand, 29182201 - 29182170
Alignment:
Q  73 acatatttgcaaggaccaaaatcatattttag 104  Q
    ||||||||||||||||||||||||||||||||    
T  29182201 acatatttgcaaggaccaaaatcatattttag 29182170  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 2265363 - 2265401
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttaggcttaa 110  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  2265363 gacatatttgcaaggactaaaatcatattttagccttaa 2265401  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 3172500 - 3172530
Alignment:
Q  74 catatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||||||||||||||||||||||    
T  3172500 catatttgcaaggaccaaaatcatattttag 3172530  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 40125257 - 40125295
Alignment:
Q  74 catatttgcaaggaccaaaatcatattttaggcttaaaa 112  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  40125257 catatttgcagggaccaaaatcatattttagccttaaaa 40125295  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 45442662 - 45442699
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttaggctta 109  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  45442662 gacatatttgcaaggactaaaatcatattttagcctta 45442699  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 103
Target Start/End: Original strand, 32906206 - 32906237
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatatttta 103  Q
    ||||||||||||||||||||||||||||||||    
T  32906206 gacatatttgcaaggaccaaaatcatatttta 32906237  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 48857213 - 48857255
Alignment:
Q  75 atatttgcaaggaccaaaatcatattttaggcttaaaactata 117  Q
    ||||||||||||||||||| |||||||||  ||||||||||||    
T  48857213 atatttgcaaggaccaaaaacatattttaaccttaaaactata 48857255  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 26207312 - 26207280
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||||||||||||| ||||||||||    
T  26207312 gacatatttgcaaggaccaaaaccatattttag 26207280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 32420132 - 32420100
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||||||||||||| ||||||||||    
T  32420132 gacatatttgcaaggaccaaaaccatattttag 32420100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 49073725 - 49073693
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||||||||||||| ||||||||||    
T  49073725 gacatatttgcaaggaccaaaaccatattttag 49073693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 25046267 - 25046297
Alignment:
Q  74 catatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||||||||||||||||||||||    
T  25046267 catatttgcaaggaccaaaatcatattttag 25046297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 30513307 - 30513337
Alignment:
Q  74 catatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||||||||||||||||||||||    
T  30513307 catatttgcaaggaccaaaatcatattttag 30513337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 36687229 - 36687261
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  36687229 gacatatttgcagggaccaaaatcatattttag 36687261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 46759908 - 46759940
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  46759908 gacatatttgcagggaccaaaatcatattttag 46759940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 27570087 - 27570057
Alignment:
Q  75 atatttgcaaggaccaaaatcatattttagg 105  Q
    |||||||||||||||||||||||||||||||    
T  27570087 atatttgcaaggaccaaaatcatattttagg 27570057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 38452362 - 38452398
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttaggctt 108  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  38452362 gacatatttgcagggaccaaaaccatattttaggctt 38452398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 42553676 - 42553644
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  42553676 gacatatttgcagggaccaaaatcatattttag 42553644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 38232275 - 38232237
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttaggcttaa 110  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  38232275 gacatatttgcagggaccaaaatcatattttagccttaa 38232237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 863315 - 863283
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  863315 gacatatttgcatggaccaaaatcatattttag 863283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 28452181 - 28452149
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||||||||||||| ||||||||||    
T  28452181 gacatatttgcaaggaccaaaaccatattttag 28452149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 35177289 - 35177257
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  35177289 gacatatttgcagggaccaaaatcatattttag 35177257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 40370319 - 40370287
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  40370319 gacatatttgcagggaccaaaatcatattttag 40370287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 47114521 - 47114489
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  47114521 gacatatttgcagggaccaaaatcatattttag 47114489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 14656226 - 14656263
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttaggctta 109  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  14656226 gacatatttgcaaggaccaaaaccatattttagcctta 14656263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 17765341 - 17765373
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  17765341 gacatatttgcagggaccaaaatcatattttag 17765373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 19129486 - 19129518
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttag 104  Q
    |||||||||||| ||||||||||||||||||||    
T  19129486 gacatatttgcagggaccaaaatcatattttag 19129518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 7230 - 7270
Alignment:
Q  72 gacatatttgcaaggaccaaaatcatattttaggcttaaaa 112  Q
    ||||||||||||  ||||||||||||||||||| |||||||    
T  7230 gacatatttgcagagaccaaaatcatattttagccttaaaa 7270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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