View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15985_low_5 (Length: 413)

Name: NF15985_low_5
Description: NF15985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15985_low_5
NF15985_low_5
[»] chr2 (2 HSPs)
chr2 (13-397)||(26300219-26300596)
chr2 (238-271)||(41947075-41947108)
[»] chr3 (3 HSPs)
chr3 (229-271)||(24870749-24870791)
chr3 (240-272)||(25562915-25562947)
chr3 (237-269)||(36060356-36060388)
[»] chr7 (5 HSPs)
chr7 (235-296)||(34925270-34925331)
chr7 (229-273)||(6518095-6518139)
chr7 (236-266)||(27720468-27720498)
chr7 (237-266)||(32016366-32016395)
chr7 (236-272)||(33043906-33043942)
[»] chr6 (6 HSPs)
chr6 (232-270)||(14342938-14342976)
chr6 (231-261)||(31582044-31582074)
chr6 (238-267)||(27708106-27708135)
chr6 (238-267)||(27727932-27727961)
chr6 (241-274)||(33725003-33725036)
chr6 (237-273)||(3247411-3247447)
[»] chr1 (2 HSPs)
chr1 (239-280)||(8344557-8344598)
chr1 (237-273)||(24808433-24808469)
[»] scaffold0898 (1 HSPs)
scaffold0898 (241-274)||(616-649)
[»] scaffold0349 (1 HSPs)
scaffold0349 (238-267)||(6511-6540)
[»] chr5 (2 HSPs)
chr5 (356-389)||(34512066-34512099)
chr5 (239-299)||(6889551-6889611)
[»] chr4 (3 HSPs)
chr4 (239-280)||(55097984-55098025)
chr4 (236-272)||(8474815-8474851)
chr4 (237-273)||(45554116-45554152)


Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 26300596 - 26300219
Alignment:
Q  13 aagaatataaatgacaacattagtagcaaactgagaattttccttcaaattctagttccaatatctacaagtgacaagtgacaatggtgtgatgtgattg 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  26300596 aagaaaataaatgacaacattagtagcaaactgagaattttccttcaaattctagttccaatatctacaagtgacaa-------tggtgtgatgtgattg 26300504  T
Q  113 aatagcccttaggtttcctcttgacttgatacactacatctattatatttgatgatgagaataagattggtgactttgactagcccgaaagaaaactcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26300503 aatagcccttaggtttcctcttgacttgatacactacatctattatatttgatgatgagaataagattggtgactttgactagctcgaaagaaaactcaa 26300404  T
Q  213 ggtgaaatcagagttttcaattgtggaaaatagtggtttgttcaaattctgctatgctacaaggctattgcagttatttgacaaaacatatcacaaatga 312  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26300403 ggtgaactcagagttttcaattgtggaaaatagtggtttgttcaaattttgctatgctacaaggctattgcagttatttgacaaaacatattacaaatga 26300304  T
Q  313 catataatggaactatagcagtttgttaaaattccattatcaaatagcgccactatatctgctatttgacaacactggttgaaat 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26300303 catataatggaactatagcagtttgttaaaattccattatcaaatagcgccactatatctgctatttgacaacactggttgaaat 26300219  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 41947075 - 41947108
Alignment:
Q  238 gaaaatagtggtttgttcaaattctgctatgcta 271  Q
    ||||||||||||||||||||||||||||||||||    
T  41947075 gaaaatagtggtttgttcaaattctgctatgcta 41947108  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 24870749 - 24870791
Alignment:
Q  229 tcaattgtggaaaatagtggtttgttcaaattctgctatgcta 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  24870749 tcaattgtggaaaatagtggtttattcaaattctgctatgcta 24870791  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 25562915 - 25562947
Alignment:
Q  240 aaatagtggtttgttcaaattctgctatgctac 272  Q
    |||||||||||||||||||||| ||||||||||    
T  25562915 aaatagtggtttgttcaaattccgctatgctac 25562947  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 36060388 - 36060356
Alignment:
Q  237 ggaaaatagtggtttgttcaaattctgctatgc 269  Q
    |||||||||||||||||||||||| ||||||||    
T  36060388 ggaaaatagtggtttgttcaaattttgctatgc 36060356  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 34925270 - 34925331
Alignment:
Q  235 gtggaaaatagtggtttgttcaaattctgctatgctacaaggctattgcagttatttgacaa 296  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||| || | ||||||||||    
T  34925270 gtggaaaatagcagtttgttcaaattctgctatgctacaatgctatagccgctatttgacaa 34925331  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 6518095 - 6518139
Alignment:
Q  229 tcaattgtggaaaatagtggtttgttcaaattctgctatgctaca 273  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||    
T  6518095 tcaattgcagaaaatagtggtttgttcaaattctgctacgctaca 6518139  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 266
Target Start/End: Complemental strand, 27720498 - 27720468
Alignment:
Q  236 tggaaaatagtggtttgttcaaattctgcta 266  Q
    |||||||||||||||||||||||||||||||    
T  27720498 tggaaaatagtggtttgttcaaattctgcta 27720468  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 266
Target Start/End: Original strand, 32016366 - 32016395
Alignment:
Q  237 ggaaaatagtggtttgttcaaattctgcta 266  Q
    ||||||||||||||||||||||||||||||    
T  32016366 ggaaaatagtggtttgttcaaattctgcta 32016395  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 33043906 - 33043942
Alignment:
Q  236 tggaaaatagtggtttgttcaaattctgctatgctac 272  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  33043906 tggaaaatagtgttttgttcaaattctgttatgctac 33043942  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 14342976 - 14342938
Alignment:
Q  232 attgtggaaaatagtggtttgttcaaattctgctatgct 270  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  14342976 attgtggaaaatagtgttttgttcaaattctgctatgct 14342938  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 261
Target Start/End: Original strand, 31582044 - 31582074
Alignment:
Q  231 aattgtggaaaatagtggtttgttcaaattc 261  Q
    |||||||||||||||||||||||||||||||    
T  31582044 aattgtggaaaatagtggtttgttcaaattc 31582074  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 27708106 - 27708135
Alignment:
Q  238 gaaaatagtggtttgttcaaattctgctat 267  Q
    ||||||||||||||||||||||||||||||    
T  27708106 gaaaatagtggtttgttcaaattctgctat 27708135  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 27727932 - 27727961
Alignment:
Q  238 gaaaatagtggtttgttcaaattctgctat 267  Q
    ||||||||||||||||||||||||||||||    
T  27727932 gaaaatagtggtttgttcaaattctgctat 27727961  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 33725003 - 33725036
Alignment:
Q  241 aatagtggtttgttcaaattctgctatgctacaa 274  Q
    ||||||||||| ||||||||||||||||||||||    
T  33725003 aatagtggtttattcaaattctgctatgctacaa 33725036  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 3247447 - 3247411
Alignment:
Q  237 ggaaaatagtggtttgttcaaattctgctatgctaca 273  Q
    |||||| |||||||||||||||||| |||||||||||    
T  3247447 ggaaaacagtggtttgttcaaattccgctatgctaca 3247411  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 8344598 - 8344557
Alignment:
Q  239 aaaatagtggtttgttcaaattctgctatgctacaaggctat 280  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  8344598 aaaatagtggtttgttcaaattctgctatgctatagggctat 8344557  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 24808469 - 24808433
Alignment:
Q  237 ggaaaatagtggtttgttcaaattctgctatgctaca 273  Q
    |||||| ||||||||||||||||||||||||||||||    
T  24808469 ggaaaacagtggtttgttcaaattctgctatgctaca 24808433  T

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Target: scaffold0898 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 649 - 616
Alignment:
Q  241 aatagtggtttgttcaaattctgctatgctacaa 274  Q
    |||||||||||||||||||| |||||||||||||    
T  649 aatagtggtttgttcaaattgtgctatgctacaa 616  T

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Target: scaffold0349 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 6511 - 6540
Alignment:
Q  238 gaaaatagtggtttgttcaaattctgctat 267  Q
    ||||||||||||||||||||||||||||||    
T  6511 gaaaatagtggtttgttcaaattctgctat 6540  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 34512066 - 34512099
Alignment:
Q  356 atagcgccactatatctgctatttgacaacactg 389  Q
    |||||||||||||| |||||||||||||||||||    
T  34512066 atagcgccactatagctgctatttgacaacactg 34512099  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 6889611 - 6889551
Alignment:
Q  239 aaaatagtggtttgttcaaattctgctatgctacaaggctattgcagttatttgacaaaac 299  Q
    |||||||||||||||||| |||  |||||||| |||  |||| || |||||||||||||||    
T  6889611 aaaatagtggtttgttcatatttagctatgctgcaacactatcgctgttatttgacaaaac 6889551  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 55098025 - 55097984
Alignment:
Q  239 aaaatagtggtttgttcaaattctgctatgctacaaggctat 280  Q
    |||||||||||||||||||| | ||||||||||||| |||||    
T  55098025 aaaatagtggtttgttcaaagtatgctatgctacaatgctat 55097984  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 8474851 - 8474815
Alignment:
Q  236 tggaaaatagtggtttgttcaaattctgctatgctac 272  Q
    |||||||||||||||||||  ||||||||||||||||    
T  8474851 tggaaaatagtggtttgtttgaattctgctatgctac 8474815  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 45554116 - 45554152
Alignment:
Q  237 ggaaaatagtggtttgttcaaattctgctatgctaca 273  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  45554116 ggaaaatagtggtttgctcaaattctgccatgctaca 45554152  T

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