View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15985_low_6 (Length: 402)

Name: NF15985_low_6
Description: NF15985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15985_low_6
NF15985_low_6
[»] chr4 (3 HSPs)
chr4 (1-402)||(226599-227000)
chr4 (191-309)||(234710-234831)
chr4 (5-158)||(236486-236637)


Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 227000 - 226599
Alignment:
Q  1 tacaagagcccaataactttactaatgagcattgataagtagtttatgacttgaactgcctgtctgcaatataacagtaacattcactgagccggcgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  227000 tacaagagcccaataactttactaatgagcattgataagtagtttatgacttgaactgcctgtctgcaatataacagtaacattcactgagccggcgttt 226901  T
Q  101 ttgaattggccataaggagaggaaaaattagattggagacctatagcccacaaggaatcttctcattgaacagggaaataatatgtaattgttgtgatat 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  226900 ttgaattggccataaggagaggaaaaattagattggaggcctatagcccacaaggaatcttctcattgaacagggaaataatatgtaattgttgtgatat 226801  T
Q  201 tatttgaacttgctactttttgggggatggggcgttgtaaatttgttttgtttctattgatttcattttcatcattgtatattaatatagtttgtgttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  226800 tatttgaacttgctactttttgggggatggggcgttgtaaatttgttttgtttctattgatttcattttcatcattgtatattaatatagtttgtgttca 226701  T
Q  301 atgtaacttctgatatcagatgtcaagctgatagttcttaaattgcgcatttaaataagtatcatttgaacaaattgtaaacaaaggctaaaaacataga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  226700 atgtaacttctgatatcagatgtcaagctgatagttcttaaattgcgcatttaaataagtatcatttgaacaaattgtaaacaaaggctaaaaacataga 226601  T
Q  401 ca 402  Q
    ||    
T  226600 ca 226599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 234831 - 234710
Alignment:
Q  191 gttgtgatattatttgaacttgctactttttgggggatggggcg----ttgtaaatttgttttgtttctattgatttcattttcatcattgtatattaat 286  Q
    |||||||||||||||||||||||||||||||||  || |||| |    ||||| ||||||||||| |||||||||||| ||||||| |||||||||||||    
T  234831 gttgtgatattatttgaacttgctactttttggttgaaggggagggtgttgtagatttgttttgtatctattgatttc-ttttcattattgtatattaat 234733  T
Q  287 atagtttgtgttcaatgtaactt 309  Q
    |||||||||||||||||||||||    
T  234732 atagtttgtgttcaatgtaactt 234710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 236637 - 236486
Alignment:
Q  5 agagcccaataactttactaatgagcattgataagtagtttatgacttgaactgcctgtctgcaatataacagtaacattcactgagccggcgtttttga 104  Q
    |||||||||| |||||||| | |||||||||| ||||||||| |||||  ||||  || | ||||||  ||||||||| ||  | ||||  ||||   ||    
T  236637 agagcccaatcactttactgacgagcattgatcagtagtttaagacttttactgtttgacagcaata--acagtaacactcgataagccatcgttgagga 236540  T
Q  105 attggccataaggagaggaaaaattagattggagacctatagcccacaaggaat 158  Q
    |||||||||| ||||||||| || |||||||||| ||| ||| |||||||||||    
T  236539 attggccatatggagaggaagaaatagattggaggcctgtagtccacaaggaat 236486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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