View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15986_high_20 (Length: 364)

Name: NF15986_high_20
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15986_high_20
NF15986_high_20
[»] chr2 (3 HSPs)
chr2 (16-353)||(15869475-15869812)
chr2 (230-311)||(21980301-21980382)
chr2 (228-285)||(45197191-45197248)
[»] chr5 (1 HSPs)
chr5 (134-319)||(15161582-15161767)
[»] chr4 (2 HSPs)
chr4 (228-317)||(53075041-53075130)
chr4 (36-122)||(53074854-53074940)
[»] chr1 (4 HSPs)
chr1 (228-303)||(1496522-1496597)
chr1 (35-112)||(1463223-1463300)
chr1 (33-125)||(1496352-1496444)
chr1 (228-316)||(1463024-1463112)
[»] chr3 (2 HSPs)
chr3 (33-112)||(50276759-50276838)
chr3 (229-315)||(50276577-50276663)
[»] chr8 (1 HSPs)
chr8 (228-316)||(26790790-26790878)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 15869812 - 15869475
Alignment:
Q  16 agtaacctccaagcatgacaccagttgcaaatatttctctcagtttccagctatcaggcattggagatggcttaactctgtcctttgaaattgtcatgat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869812 agtaacctccaagcatgacaccagttgcaaatatttctctcagtttccagctatcaggcattggagatggcttaactctgtcctttgaaattgtcatgat 15869713  T
Q  116 tgttcctaaagatatatgaaagttattatttaaaatcacatcattttcatacatcatagcttctataaagagatttctaagtatattttacagaaacaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869712 tgttcctaaagatatatgaaagttattatttaaaatcacatcattttcatacatcatagcttctataaagagatttctaagtatattttacagaaacaga 15869613  T
Q  216 agttaagaaatataccatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttccatatcagtgcaataaacatgaagccaaactg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869612 agttaagaaatataccatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttccatatcagtgcaataaacatgaagccaaactg 15869513  T
Q  316 cattcagaaatagaaaattcatactcattagcattcat 353  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15869512 cattcagaaatagaaaattcatactcattagcattcat 15869475  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 21980301 - 21980382
Alignment:
Q  230 ccatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttccatatcagtgcaataaacatgaagccaa 311  Q
    |||||||| |||||||| || |||||||||||||| || ||||||||||||||||| || || |||| || |||||| ||||    
T  21980301 ccatcattcaaaatggcgatgatcaaaaccatgaaaggggagaaatcaaacttccaaattagagcaacaagcatgaacccaa 21980382  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 45197191 - 45197248
Alignment:
Q  228 taccatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttcca 285  Q
    |||||||||| |  |||||||| ||||||||||| || |||||||||||||| |||||    
T  45197191 taccatcattaagtatggcaatgatcaaaaccataaaaggagagaaatcaaatttcca 45197248  T

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Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 134 - 319
Target Start/End: Original strand, 15161582 - 15161767
Alignment:
Q  134 aaagttattatttaaaatcacatcattttcatacatcatagcttctataaagagatttctaagtatattttacagaaacagaagttaagaaatataccat 233  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| | |||||||||| | ||||||    
T  15161582 aaagttattatttaaaatcacatcattttcatacagcatagcttatataaagagatttctaagtatattttatagaaatataagttaagaactttaccat 15161681  T
Q  234 catttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttccatatcagtgcaataaacatgaagccaaactgcatt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  15161682 catttaaaatggcaataatcaaaaccatgaatggagagaaatcaaatttccatatcagtgcaataaacataaagccaaactgcatt 15161767  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 53075041 - 53075130
Alignment:
Q  228 taccatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttccatatcagtgcaataaacatgaagccaaactgca 317  Q
    |||||||||| | ||||||||||||||| |||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  53075041 taccatcattaagaatggcaataatcaagaccatgaaaggagagaagtcaaatttccagatcagtgcaatgaacatgaagccaaactgca 53075130  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 53074854 - 53074940
Alignment:
Q  36 ccagttgcaaatatttctctcagtttccagctatcaggcattggagatggcttaactctgtcctttgaaattgtcatgattgttcct 122  Q
    ||||| |||||||||||| ||| ||||||||||||||||| |||||||||    || || || ||||||||||||||||||||||||    
T  53074854 ccagtagcaaatatttctttcaatttccagctatcaggcaatggagatggaaccaccctatcttttgaaattgtcatgattgttcct 53074940  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 1496522 - 1496597
Alignment:
Q  228 taccatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttccatatcagtgcaataaacat 303  Q
    |||||||||||| |||||||||||||||||||||||| || |  |||||||||||||| ||||  |||||||||||    
T  1496522 taccatcatttagaatggcaataatcaaaaccatgaagggtgcaaaatcaaacttccagatcaacgcaataaacat 1496597  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 1463300 - 1463223
Alignment:
Q  35 accagttgcaaatatttctctcagtttccagctatcaggcattggagatggcttaactctgtcctttgaaattgtcat 112  Q
    |||||| |||||||||||  | ||||||||||||||||| | ||||||||| |||||||| |||||||| ||||||||    
T  1463300 accagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattgtcat 1463223  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 1496352 - 1496444
Alignment:
Q  33 acaccagttgcaaatatttctctcagtttccagctatcaggcattggagatggcttaactctgtcctttgaaattgtcatgattgttcctaaa 125  Q
    |||||||| |||||||| || ||||||||||| |||||||| | ||||||||| || ||||| |||||||| |||||||| || || ||||||    
T  1496352 acaccagtagcaaatatctccctcagtttccaactatcaggtagtggagatggtttcactctatcctttgatattgtcataatggtacctaaa 1496444  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 1463112 - 1463024
Alignment:
Q  228 taccatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttccatatcagtgcaataaacatgaagccaaactgc 316  Q
    |||||||||| |  || ||||| ||||||||||||||||| |  |||||||| ||||| ||||  ||||| |||||||| |||||||||    
T  1463112 taccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaatcaaagcaattaacatgaaaccaaactgc 1463024  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 50276838 - 50276759
Alignment:
Q  33 acaccagttgcaaatatttctctcagtttccagctatcaggcattggagatggcttaactctgtcctttgaaattgtcat 112  Q
    |||||||| |||||||| |||||||||||||| || || |||||||||||||| || ||||| ||||| || ||||||||    
T  50276838 acaccagtagcaaatatctctctcagtttccaactgtctggcattggagatggttttactctatccttggatattgtcat 50276759  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 50276663 - 50276577
Alignment:
Q  229 accatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttccatatcagtgcaataaacatgaagccaaactg 315  Q
    |||||||||||  ||||| ||||| || |||||||| || |  |||||||||||||| ||||  ||||| |||||||| ||||||||    
T  50276663 accatcatttagtatggcgataattaacaccatgaagggtgcaaaatcaaacttccagatcaaggcaatgaacatgaaaccaaactg 50276577  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 26790878 - 26790790
Alignment:
Q  228 taccatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttccatatcagtgcaataaacatgaagccaaactgc 316  Q
    |||||||||| |  || ||||| |||||||||||||| ||||| |||||||| ||||| ||||  ||||||| ||| || |||||||||    
T  26790878 taccatcattaagtattgcaatgatcaaaaccatgaagggagaaaaatcaaatttccaaatcaaagcaataagcataaaaccaaactgc 26790790  T

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