View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_high_21 (Length: 342)
Name: NF15986_high_21
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 51124032 - 51123715
Alignment:
| Q |
10 |
gacatcatcaattgagttagatcttacgtattaaaatccgttaatttagtccccaaagtataaaaatacgcacttggagatattggtaatggcgttaggc |
109 |
Q |
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| T |
51124032 |
gacatcatcaattgagttagatcttatgtattaaaatccgtcaatttaatccctaaagtataaaaatacgcacttggagatattggtaatggcattaggc |
51123933 |
T |
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| Q |
110 |
tctaatacaaatacatgttgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagtccaagtggtatatataaccaccg |
209 |
Q |
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| T |
51123932 |
tctaatacaaatacatgttgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagtccaagtggtatatataaccaccg |
51123833 |
T |
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| Q |
210 |
aaaatttcttaacatatatagaacagaaccaaacaattcttctttgactataaaagcatatttagaaacctcaacaatcatatatacatagcctaacagc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51123832 |
aaaatttcttaacatatatagaacagaaccaaacaattcttctttgactataaaagcatatttagaaacctcaacaatcatatatacatagcctaacagc |
51123733 |
T |
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| Q |
310 |
tattccataagttgcatc |
327 |
Q |
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| T |
51123732 |
tattccataagttgcatc |
51123715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 94 - 253
Target Start/End: Original strand, 32149981 - 32150139
Alignment:
| Q |
94 |
ggtaatggcgttaggctctaatacaaatacatg---ttgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagtccaa |
190 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32149981 |
ggtaatggcattaggctctaatacaaatacatgctattgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagcccaa |
32150080 |
T |
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| Q |
191 |
gtggtatatataaccaccgaaaatttcttaacatatatagaacagaaccaaacaattcttctt |
253 |
Q |
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|||| |||||||||||| |||| ||||| |||||||||| ||||||||||||||||| |
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| T |
32150081 |
gtgg--tatataaccaccaaaaaaaatttaac--atatagaacaagaccaaacaattcttctt |
32150139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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