View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_high_24 (Length: 328)
Name: NF15986_high_24
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 49290103 - 49289798
Alignment:
| Q |
19 |
attaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccacc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290103 |
attaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccacc |
49290004 |
T |
|
| Q |
119 |
aatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290003 |
aatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgct |
49289904 |
T |
|
| Q |
219 |
ggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccacctttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49289903 |
ggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttg |
49289804 |
T |
|
| Q |
319 |
ctactc |
324 |
Q |
| |
|
||||| |
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| T |
49289803 |
ttactc |
49289798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 49297054 - 49296749
Alignment:
| Q |
19 |
attaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297054 |
attaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccacc |
49296955 |
T |
|
| Q |
119 |
aatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296954 |
aatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgct |
49296855 |
T |
|
| Q |
219 |
ggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccacctttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49296854 |
ggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttg |
49296755 |
T |
|
| Q |
319 |
ctactc |
324 |
Q |
| |
|
||||| |
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|
| T |
49296754 |
ttactc |
49296749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 49303784 - 49303479
Alignment:
| Q |
19 |
attaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303784 |
attaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcaccacc |
49303685 |
T |
|
| Q |
119 |
aatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303684 |
aatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgct |
49303585 |
T |
|
| Q |
219 |
ggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccacctttg |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
49303584 |
ggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaaccatctttg |
49303485 |
T |
|
| Q |
319 |
ctactc |
324 |
Q |
| |
|
||||| |
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|
| T |
49303484 |
ttactc |
49303479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 307
Target Start/End: Original strand, 6567878 - 6568113
Alignment:
| Q |
69 |
ttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtg |
168 |
Q |
| |
|
||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| || ||||| || | | || || ||| ||| ||| |
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| T |
6567878 |
ttaaggtgaaggctcataacttcattagctccaccaacaagctcaccaccaatgaacacagcaggcacagaagggttacatcctagccttaaaa---gtg |
6567974 |
T |
|
| Q |
169 |
cttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgca |
268 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||| |||||||||| |||||||||| || || || || ||||| |||| |||||| |
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| T |
6567975 |
cttgttcaatgtctctccctccactcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacacatgca |
6568074 |
T |
|
| Q |
269 |
acatgaactcttgctgaatatcaccactggcctttctga |
307 |
Q |
| |
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||| ||||||||||||||||||||||| ||| ||||| |
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| T |
6568075 |
acaactactcttgctgaatatcaccactgacctctctga |
6568113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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