View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_high_33 (Length: 284)
Name: NF15986_high_33
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 30719870 - 30720137
Alignment:
| Q |
20 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719870 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
30719969 |
T |
|
| Q |
120 |
ctcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa-------------------cagagttcaatgacaattc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
30719970 |
ctcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagagtttaatgacaattc |
30720069 |
T |
|
| Q |
201 |
aatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgacctt |
272 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30720070 |
aatatttgatca----catagtttgtaattgaatgcattacataatagatagacacttaccacattgacctt |
30720137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 30892572 - 30892305
Alignment:
| Q |
20 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30892572 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
30892473 |
T |
|
| Q |
120 |
ctcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa-------------------cagagttcaatgacaattc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
30892472 |
ctcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagagtttaatgacaattc |
30892373 |
T |
|
| Q |
201 |
aatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgacctt |
272 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30892372 |
aatatttgatca----catagtttgtaattgaatgcattacataatagatagacacttaccacattgacctt |
30892305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 30881489 - 30881222
Alignment:
| Q |
20 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30881489 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
30881390 |
T |
|
| Q |
120 |
ctcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa-------------------cagagttcaatgacaattc |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
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|
| T |
30881389 |
ctcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagaatttaatgacaattc |
30881290 |
T |
|
| Q |
201 |
aatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgacctt |
272 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
30881289 |
aatatttgatca----catagtttgtaattgaatgcattacataatagatagacacttaccacattgacctt |
30881222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 44731306 - 44731464
Alignment:
| Q |
20 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44731306 |
gaaagcatcgtccataagaccaccctcacaaccttggtccacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaactttccagta |
44731405 |
T |
|
| Q |
120 |
ctcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctac |
178 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
44731406 |
ctcaacttagtaattccttcggttgctgcaacagctgaaaatgcccaacaacatcctac |
44731464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 16867693 - 16867854
Alignment:
| Q |
20 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||||||| |||||| |||||| |
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| T |
16867693 |
gaaagcatcgtccataagaccaccctcacaaccttggtccacacctttcgtgtcacagtcaacgagttcttgttctgataaagagatcaactttccagta |
16867792 |
T |
|
| Q |
120 |
ctcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
16867793 |
ctcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
16867854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 8899104 - 8898943
Alignment:
| Q |
20 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
8899104 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttctgataaagagaccaactttccagta |
8899005 |
T |
|
| Q |
120 |
ctcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
8899004 |
ctcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
8898943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 31727261 - 31727101
Alignment:
| Q |
21 |
aaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtac |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| || || || |
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| T |
31727261 |
aaagcatcatccataagaccaccctcacaaccttggtcttcaccatttgtgtcacaatcaacaagttcttgttctgataaagagaccaaatttcctgtgg |
31727162 |
T |
|
| Q |
121 |
tcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
181 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |
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|
| T |
31727161 |
tcaacttatgaattccttcggttgatgcaaccgcagaaaacgcccaacaacatcctacaaa |
31727101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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