View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_high_40 (Length: 248)
Name: NF15986_high_40
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_high_40 |
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| [»] scaffold0779 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 10544639 - 10544863
Alignment:
| Q |
9 |
gacatcatcctggtaggctcttctcttcatgaatttgatagaatcaaatccattttagattccaaattcaagatcaaggatttaggagttctcaagtatt |
108 |
Q |
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| T |
10544639 |
gacatcatcctggcaggctcttctcttcatgaatttgatagaatcaaatccattttagattccaaattcaagatcaaggatttaggagttctcaaggatt |
10544738 |
T |
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| Q |
109 |
tcttagggttggaaattgctcactctaatgcaggcattagtgtttcacaaaggaagtattgtctagaacttttagattcttctggcttattaggatctaa |
208 |
Q |
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| T |
10544739 |
tcttagggttggaaattgctcactctaatgcaggcattagtgtttcacaaaggaagtattgtctagaccttttagattcttctggcttattaggatctaa |
10544838 |
T |
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| Q |
209 |
acctgctagcacacccttagatact |
233 |
Q |
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| T |
10544839 |
acctgctagcacacccttagatact |
10544863 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 20078060 - 20078192
Alignment:
| Q |
38 |
tgaatttgatagaatcaaatccattttagattccaaattcaagatcaaggatttaggagttctcaagtatttcttagggttggaaattgctcactctaat |
137 |
Q |
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| T |
20078060 |
tgaatttcaaagaatcaaatctattctagatgctcatttcaagattaaagatttaggcattctcaaatacttcttaggattggaagttgctcactctaaa |
20078159 |
T |
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| Q |
138 |
gcaggcattagtgtttcacaaaggaagtattgt |
170 |
Q |
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| T |
20078160 |
gaaggcatttcaatttcccaaaggaagtattgt |
20078192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 5387 - 5486
Alignment:
| Q |
73 |
aattcaagatcaaggatttaggagttctcaagtatttcttagggttggaaattgctcactctaatgcaggcattagtgtttcacaaaggaagtattgtct |
172 |
Q |
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| T |
5387 |
aattcaaaattaaggatttaggaatccttaaatatttcttgggtttggaagttgctcactctaaagcaggaattacagtatcccaaagaaaatattgtct |
5486 |
T |
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