View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15986_high_52 (Length: 210)
Name: NF15986_high_52
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_high_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 27294703 - 27294745
Alignment:
| Q |
151 |
gaataaatatttgatcaattattgatttgcgtaaccaattaat |
193 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27294703 |
gaataaatattttatcaattattgatttgcgtaaccaattaat |
27294745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 27264259 - 27264295
Alignment:
| Q |
157 |
atatttgatcaattattgatttgcgtaaccaattaat |
193 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
27264259 |
atattttatcaattattgatttgcgtaagcaattaat |
27264295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 27271160 - 27271196
Alignment:
| Q |
157 |
atatttgatcaattattgatttgcgtaaccaattaat |
193 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
27271160 |
atattttatcaattatggatttgcgtaaccaattaat |
27271196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 27279910 - 27279946
Alignment:
| Q |
157 |
atatttgatcaattattgatttgcgtaaccaattaat |
193 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
27279910 |
atattttatcaattattgatttgtgtaaccaattaat |
27279946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University