View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15986_high_54 (Length: 208)
Name: NF15986_high_54
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_high_54 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 38101225 - 38101053
Alignment:
| Q |
18 |
agaggcttttgatgatatcaataggccagcacctgtaccagttggaatcatcgattctttaggggtcctaactgagaaatttggaagaagagctggtaat |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38101225 |
agaggcttttgatggtatcaataggccagcacctgtaccagttggaatcatcgattctttaggggtcctaactgagaaatttggaagaagagctggtaat |
38101126 |
T |
|
| Q |
118 |
atgaaggtatgtcaagtatcaagaatatatagaagcaagtgattcataatt-ctcacaatttcaagttcttaa |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38101125 |
atgaaggtatgtcaagtatcaagaatatatagaagcaagtgattcataattcctcacaatttcaagttcttaa |
38101053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University