View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15986_high_8 (Length: 419)
Name: NF15986_high_8
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 4349063 - 4348664
Alignment:
| Q |
1 |
agcgaagtgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaagaaataaccccc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4349063 |
agcgaagcgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaagaaataatcccc |
4348964 |
T |
|
| Q |
101 |
ttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagaaactatattagatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4348963 |
ttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaactatattagatgc |
4348864 |
T |
|
| Q |
201 |
tcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatactggtttaagtaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4348863 |
tcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatactggtttaagtaa |
4348764 |
T |
|
| Q |
301 |
ttatgacttgaagcatacctgagaaagatggaggactctagaagtatgaggatccaagccaccaactttagtcatagatggatattgccacaaacacagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4348763 |
ttatgacttgaagcatacctgagaaagatggaggactctagaagtatggggatccaagccaccaactttagtcatagatggatattgccacaaacacagt |
4348664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 25744992 - 25745381
Alignment:
| Q |
1 |
agcgaagtgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaagaaataaccccc |
100 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| | || |
|
|
| T |
25744992 |
agcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgta--acttgaatgaaataatcacc |
25745089 |
T |
|
| Q |
101 |
ttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagaaactatattagatgc |
200 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| || | |||||||||| ||| | ||| ||||||||| |
|
|
| T |
25745090 |
ttgataaagtttaagtggtttgattcatgtttatatgttttaacaaagttgaagtttatat--------gaaaacaatctgaagcagctaaattagatgc |
25745181 |
T |
|
| Q |
201 |
tcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatactggtttaagtaa |
300 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25745182 |
tcttgccaatgaatgactgtactcgcattcttacatgctataaaaattcacattggacgattaatcgtctcacgatttaccactatactggtttaagtaa |
25745281 |
T |
|
| Q |
301 |
ttatgacttgaagcatacctgagaaagatggaggactctagaagtatgaggatccaagccaccaactttagtcatagatggatattgccacaaacacagt |
400 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25745282 |
tgatgacttgaagcatacctgagaaagatggaggactctagaagtatgagggtccaagcctccaactttagtcatggatggatattgccacaaacacagt |
25745381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 18928523 - 18928595
Alignment:
| Q |
311 |
aagcatacctgagaaagatggaggactct---agaagtatgaggatccaagccaccaactttagtcatagatg |
380 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| | |||||| |||| ||| |||||||||| |
|
|
| T |
18928523 |
aagcatacctgagaaagatggaggactctggaggaagtatgagggttcaagcctccaagtttggtcatagatg |
18928595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University