View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_high_9 (Length: 413)
Name: NF15986_high_9
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Original strand, 48670036 - 48670420
Alignment:
| Q |
12 |
gaatttcatcaacgaatctttgtatattcctgtcagaagagccaccatcagccaccgcctccctcgccgcatgtttcagctccaacgcatttttcttaaa |
111 |
Q |
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| T |
48670036 |
gaatttcatcaacgaatctttgtatattcctgtcagaagagccaccatcagccaccgcctccctcgccgcatgtttcagctccaacgcatttttcttaaa |
48670135 |
T |
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| Q |
112 |
cacttcagacctttctcctccaacaatttcttcaatggctctttcaacttcatcactttcaacaaacccatcattgtcctgtttcaaccggatccccata |
211 |
Q |
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| T |
48670136 |
cacttcagacctttctcctccaacaatttcttcaatggctctttcaacttcatcactttcaacaaacccatcattgtcctgtttcaaccggatccccata |
48670235 |
T |
|
| Q |
212 |
cgaaaaacatcagaaacaagtgttgcatttgttggttgatcagtccattgtggataaccaatcataggtactcctgcagttatagcttccaatgtagaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48670236 |
cgaaaaacatcagaaacaagtgttgcatttgttggttgatcagtccattgtggataaccaatcataggtactcctgcagttatagcttccaatgtagaat |
48670335 |
T |
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| Q |
312 |
tccatccacagtgtgttaagaaacacgctattgcaggatgaaccaaaaccttagtttgtggacaccatgtaacaaccaatccttt |
396 |
Q |
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| T |
48670336 |
tccatccacagtgtgttaagaaacacgctattgcaggatgaaccaaaaccttagtttgtggacaccatgtaacaaccaatccttt |
48670420 |
T |
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