View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15986_low_1 (Length: 758)

Name: NF15986_low_1
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15986_low_1
NF15986_low_1
[»] chr4 (3 HSPs)
chr4 (18-745)||(2898739-2899466)
chr4 (69-300)||(2885392-2885625)
chr4 (512-741)||(2885069-2885298)
[»] chr2 (6 HSPs)
chr2 (540-727)||(44224641-44224828)
chr2 (603-727)||(44212538-44212662)
chr2 (540-727)||(44235451-44235638)
chr2 (94-185)||(44235164-44235255)
chr2 (94-185)||(44212183-44212274)
chr2 (94-185)||(44224349-44224440)
[»] chr7 (2 HSPs)
chr7 (555-732)||(39576462-39576639)
chr7 (540-640)||(39549512-39549612)
[»] chr3 (1 HSPs)
chr3 (572-677)||(49771134-49771239)


Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 18 - 745
Target Start/End: Original strand, 2898739 - 2899466
Alignment:
Q  18 atagtgtaattttgtttacatcacagtgtattagaattaaactctaaaagaaaacaagcttgtaacttctgttttgaactcacttctggacataatgaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2898739 atagtgtaattttgtttacatcacagtgtattagaattaaactctaaaagaaaacaagcttgtaacttctgttttgaactcacttctggacataatgaag 2898838  T
Q  118 ccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttggccacaatcatgtttctaccgagtgcagcaatagctcgaaatagtccagaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  2898839 ccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttggccacaatcatgtttctaccaagtgctgcaatagctcgaaatagtccagaag 2898938  T
Q  218 ccatttggtttatcagtaatagcagaagatactgctttagtaatctgcataagtaacaaaacctcacatcattagtaacactatcttcaagggggacaag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  2898939 ccatttggtttatcagtaatagcagaagatactgctttagtaatctgcataagtaacaatacctcacatcattagtaacactatcttcaagggggacaat 2899038  T
Q  318 aggttttaaaataagatccgtgaccatgatctaggcttcaaagtcgtggtttttaacgtttctatgacctcaacattactgagttttgtagccaggtaaa 417  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2899039 aggttttaaaataagatccacgaccatgatctaggcttcaaagtcgtggtttttaacgtttctacgacctcaacattactgagttttgtagccaggtaaa 2899138  T
Q  418 ctgcatttcattgtgattctccaaaatatcaagaattgcgatccaatgagcattaaaatctagaacgagtagtttagacatgctgtaaatagataaggaa 517  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2899139 ccgcatttcattgtgattctccaaaatatcaagaattgcgatccaatgagcattaaaatctagaacgagtagtttagacatgctgtaaatagataaggaa 2899238  T
Q  518 ggttctttacctcgtaacatccggatcgaatcctattacataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttgaggatc 617  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2899239 ggttctttacctcgtaacattcggatcgaatcctattacataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttgaggatc 2899338  T
Q  618 catgcaggtatagaatatgcccaagaaggataaaatagaaggtctctttgcttgtagaaactaggaagctttgcaatggtcattgaaagttcagccaatc 717  Q
    |||| |||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2899339 catgtaggtatagcatatgcccatgaaggaaaaaacagaaggtctctttgcttgtagaaactaggaagcttcgcaatggtcattgaaagttcagccaatc 2899438  T
Q  718 cattaaacataagcataaccactgagaa 745  Q
    ||||||||||||||||||||||||||||    
T  2899439 cattaaacataagcataaccactgagaa 2899466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 69 - 300
Target Start/End: Complemental strand, 2885625 - 2885392
Alignment:
Q  69 aaacaagcttgtaacttctgtt--ttgaactcacttctggacataatgaagccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttgg 166  Q
    |||||||||||||| ||| |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  2885625 aaacaagcttgtaatttcggttatttgaactcacttctggacataacgaagccacctaatgtaagaagtgcgagaagtgcaaaggacccaaatgtattgg 2885526  T
Q  167 ccacaatcatgtttctaccgagtgcagcaatagctcgaaatagtccagaagccatttggtttatcagtaatagcagaagatactgctttagtaatctgca 266  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2885525 ccacaatcatgtttctaccaagtgctgcaatagctcgaaatagtccagaagccatttggtttatcagtaatagcagaagatactgctttagtaacctgca 2885426  T
Q  267 taagtaacaaaacctcacatcattagtaacacta 300  Q
    ||| |||||| |||||||| ||| | ||||||||    
T  2885425 taaataacaatacctcacaccataaataacacta 2885392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 512 - 741
Target Start/End: Complemental strand, 2885298 - 2885069
Alignment:
Q  512 aaggaaggttctttacctcgtaacatccggatcgaatcctattacataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttg 611  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||    
T  2885298 aaggaaggttctttacctcgtaacatttggatcgaatcctattacgtaataggtgagaaaaacccaagcagcaacttccagaaaggtaataggaatcttg 2885199  T
Q  612 aggatccatgcaggtatagaatatgcccaagaaggataaaatagaaggtctctttgcttgtagaaactaggaagctttgcaatggtcattgaaagttcag 711  Q
    |||||||||| |||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  2885198 aggatccatgtaggtatagcatatgcccatgaaggaaaaaacagaaggtctctttgcttgtagaaactaggaagcttagcaatggtcattgaaagttcgg 2885099  T
Q  712 ccaatccattaaacataagcataaccactg 741  Q
    ||| |||||||||||||| |||||| ||||    
T  2885098 ccattccattaaacataatcataactactg 2885069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 540 - 727
Target Start/End: Original strand, 44224641 - 44224828
Alignment:
Q  540 ggatcgaatcctattacataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgcaggtatagaatatgccc 639  Q
    ||||| ||||| || ||||| ||||| || || ||||||| || ||||||||  |||| ||  ||||||||||| ||||| | ||| |||| ||||||||    
T  44224641 ggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgccc 44224740  T
Q  640 aagaaggataaaatagaaggtctctttgcttgtagaaactaggaagctttgcaatggtcattgaaagttcagccaatccattaaacat 727  Q
    | || ||||||||||||||||||| |||||||||| ||  ||||||||| ||||||||||| ||||  |||| || ||||||||||||    
T  44224741 atgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacat 44224828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 603 - 727
Target Start/End: Original strand, 44212538 - 44212662
Alignment:
Q  603 ggaatcttgaggatccatgcaggtatagaatatgcccaagaaggataaaatagaaggtctctttgcttgtagaaactaggaagctttgcaatggtcattg 702  Q
    ||||||||||| ||||||| ||| |||| ||||||||| || ||||||||||||||||||| |||||||||| ||  ||||||||| ||||||||||| |    
T  44212538 ggaatcttgagaatccatgaaggaatagcatatgcccatgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatag 44212637  T
Q  703 aaagttcagccaatccattaaacat 727  Q
    |||  |||| || ||||||||||||    
T  44212638 aaatctcagacattccattaaacat 44212662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 540 - 727
Target Start/End: Original strand, 44235451 - 44235638
Alignment:
Q  540 ggatcgaatcctattacataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgcaggtatagaatatgccc 639  Q
    ||||| ||||| || ||||| ||||| || || ||||| | || ||||||||  ||||  || ||||||||||| ||||| | ||| |||| ||||||||    
T  44235451 ggatcaaatccaataacatagtaggtaagaaacacccatagagaaacttccactaatgagatgggaatcttgagaatccacgaaggaatagcatatgccc 44235550  T
Q  640 aagaaggataaaatagaaggtctctttgcttgtagaaactaggaagctttgcaatggtcattgaaagttcagccaatccattaaacat 727  Q
    | || ||||||||||||||||||| |||||||||| ||  ||||||||| ||||||||||| ||||  |||| || ||||||||||||    
T  44235551 atgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacat 44235638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 44235164 - 44235255
Alignment:
Q  94 aactcacttctggacataatgaagccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttggccacaatcatgtttctacc 185  Q
    |||| |||||| || | |||||||||||| |||| |||||||| ||||| ||||||||| |||||||| ||||| |||||||||||||||||    
T  44235164 aacttacttcttgagagaatgaagccacccaatgcaagaagtgtgagaactgcaaaggacccaaatgtattggcaacaatcatgtttctacc 44235255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 44212183 - 44212274
Alignment:
Q  94 aactcacttctggacataatgaagccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttggccacaatcatgtttctacc 185  Q
    |||| |||||| || | |||||||||||| |||| || ||||| ||||| ||||||||| |||||||| ||||| |||||||||||||||||    
T  44212183 aacttacttcttgagagaatgaagccacccaatgcaaaaagtgtgagaactgcaaaggacccaaatgtattggcaacaatcatgtttctacc 44212274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 44224349 - 44224440
Alignment:
Q  94 aactcacttctggacataatgaagccacctaatgtaagaagtgcgagaagtgcaaaggatccaaatgtgttggccacaatcatgtttctacc 185  Q
    |||| |||||| || | |||||||||||| ||||  |||| || ||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  44224349 aacttacttcttgagagaatgaagccacccaatgacagaaatgtgagaagtgcaaaggacccaaatgtattggcaacaatcatgtttctacc 44224440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 555 - 732
Target Start/End: Original strand, 39576462 - 39576639
Alignment:
Q  555 acataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgcaggtatagaatatgcccaagaaggataaaata 654  Q
    |||||||||||||||||   |||||||||  ||||   ||| || | ||| || || |||||||||| ||| | |  ||||||||||||||| || || |    
T  39576462 acataataggtgaggaatgtccaaacagctgcttcagcaaacgttacagggattttaaggatccatgaaggaagaccatatgcccaagaagggtagaaga 39576561  T
Q  655 gaaggtctctttgcttgtagaaactaggaagctttgcaatggtcattgaaagttcagccaatccattaaacataagca 732  Q
    ||||||||||||||||||| ||    |||||| |  ||| |||||||||||||||||| |||||||||||||||||||    
T  39576562 gaaggtctctttgcttgtaaaacacgggaagcctcacaacggtcattgaaagttcagcaaatccattaaacataagca 39576639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 640
Target Start/End: Original strand, 39549512 - 39549612
Alignment:
Q  540 ggatcgaatcctattacataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgcaggtatagaatatgccc 639  Q
    |||||||| || || ||||| ||||| ||||| ||||||||||||||||||| ||| || |  || || || |||||||||||||| | || ||||||||    
T  39549512 ggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatccatgcaggaagagcatatgccc 39549611  T
Q  640 a 640  Q
    |    
T  39549612 a 39549612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 677
Target Start/End: Complemental strand, 49771239 - 49771134
Alignment:
Q  572 aacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgcaggtatagaatatgcccaagaaggataaaatagaaggtctctttgcttg 671  Q
    |||||||| | ||||||| | ||| || ||||||||||| |||||||| | ||| | |||||||||||||| |||  |||  |||||||| ||||||||     
T  49771239 aacccaaataccaacttctacaaaggttataggaatcttaaggatccaagtaggcaaagaatatgcccaagcagggaaaagcagaaggtccctttgctta 49771140  T
Q  672 tagaaa 677  Q
    ||||||    
T  49771139 tagaaa 49771134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University