View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_12 (Length: 406)
Name: NF15986_low_12
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 24 - 389
Target Start/End: Original strand, 1820980 - 1821335
Alignment:
| Q |
24 |
ggagtagagatgagtcttagatattatcaatgcttgtgaaccaccattcattttgcacttactacaacattttgatttgcttcgataagtttctttacta |
123 |
Q |
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| T |
1820980 |
ggagtagagatgagtcttagatattatcaatgcttgtgaaccaccattcattttgcacttactacaacattttgatttgcttcggtaagtttctttacta |
1821079 |
T |
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| Q |
124 |
cacagtacaacagatgcaaagcaagaaaggttgatccttcaaaagttggaatgcaaagacaacttttctgatgtgaatatgatggaagactgaaggcaaa |
223 |
Q |
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| T |
1821080 |
cacagtacaacagatgcaaagcaagaaaggttgatccttcaaaagttggaatgcaaagacaacttttctgatgtgaatatgatggaagactgaaggcaaa |
1821179 |
T |
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| Q |
224 |
gaaaggaaaacaaaattgaagatggtgtggattaaatcattaacctgattgtctgtacagattgttttgttctatatttccgtttctagtgtaatcttgg |
323 |
Q |
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| T |
1821180 |
g----------aaaattgaagatggtgtggattaaatcattaacctgattgtgtgtacagattgttttgttctatatttccgtttcttgtgtaatcttgg |
1821269 |
T |
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| Q |
324 |
ttgactgaagttgagtacttctgagatgtatacttgacagaatgactgtctatttaacccaaaaat |
389 |
Q |
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| T |
1821270 |
ttgactgaagttgagtacttctgaaatgtatacttgacagaatgactgtctatttaacccaaaaat |
1821335 |
T |
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