View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_14 (Length: 404)
Name: NF15986_low_14
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 37462592 - 37462215
Alignment:
| Q |
18 |
actaatggataatatttttaaggacaatgtaaagatattttacactgtaaatcaatcatatccattaggttattaaaacatttgactttattcatgattc |
117 |
Q |
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| T |
37462592 |
actaatggataatatttttaaggacaatgtaaagatattttacaccgtaaatcaatcatatccattagattattaaa-catttgactttattcatgattc |
37462494 |
T |
|
| Q |
118 |
cttttaaagagtaagcatggaacctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaatgctgcacaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37462493 |
cttttaaagagtaagcatggaacctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaatgctgcacaag |
37462394 |
T |
|
| Q |
218 |
gaggaagaagagggtatttacacttccctggtttctcttgtgtttgtctaatagaaaaaccaaacaaataaacagtcaaaaacacataaactcattcttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37462393 |
gaggaagaagagggtatttacacttccctggtttctcttgtgcttgtctaatagaaaaaccaaacaaataaacagtcaaaaaaacataaactcattcttt |
37462294 |
T |
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| Q |
318 |
cacaatcataacacacaccacaagaaaattgtgacttatcattagttcttacttgtgcacttcactatcatttcttctc |
396 |
Q |
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| T |
37462293 |
cacaatcataacacacaccacaagaaaattgtgacttatcattagttcttacttgtgcacttcactatcatttcttctc |
37462215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 37456779 - 37456711
Alignment:
| Q |
138 |
aacctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaa |
206 |
Q |
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| T |
37456779 |
aacctgaatcatatgccacacgcagcgccatgcttcacgtgaaaacactggagccataatctcaacaaa |
37456711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 39263195 - 39263127
Alignment:
| Q |
138 |
aacctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaa |
206 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| || || |||||||||||||| ||||| |
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| T |
39263195 |
aacctgaatcatatgccacacacaacgccatgcttctcgcgagaatactggagccataatctcaacaaa |
39263127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 11893378 - 11893309
Alignment:
| Q |
138 |
aacctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaat |
207 |
Q |
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|||||| ||||| ||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||| |
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| T |
11893378 |
aacctgtatcatatgccacacacaacgccatgaatctctggaaaatacaggagccatgatctcaacaaat |
11893309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 40419265 - 40419333
Alignment:
| Q |
139 |
acctgaatcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaat |
207 |
Q |
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||||||| ||| |||||||||||||||||||| || || |||||| |||| |||||||| || |||||| |
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| T |
40419265 |
acctgaagcatatgccacacacaacgccatgcttcccgagaaaaagcaggggccataatttccacaaat |
40419333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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