View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_16 (Length: 383)
Name: NF15986_low_16
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 36393232 - 36392880
Alignment:
| Q |
15 |
caaaggggaattttgctgaagcttttaggaaa--catgaagaaaaattcactgagagtaaagggaagatacaaaagtggaggtatgcattgagagaggtt |
112 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36393232 |
caaaggggaattttgctgaagcttttagaaaaaacatgaagaaaaattcactgagagtaaagggaagatacaaaagtggaggtatgcattgagagaggtt |
36393133 |
T |
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| Q |
113 |
gccaacttgtcaggctgggactctaaggatcagtaagtgtatgcctttaattgtattgtggtctccagaggatattgaggaggtgttgagaaaaaataag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36393132 |
gccaacttgtcaggctgggactctaaggatcagtaagtgcatgcctttaattgtattgtggtctccagaggatattgaggaggtgttgagaaaaaataag |
36393033 |
T |
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| Q |
213 |
gtaattcctaagtccaatattacatcacttttgttgtattgcattaactgtatctcatgatacctatttgaaatttatcgtttaatagggaacagaactt |
312 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36393032 |
gtaattcctaattccaatattacatcacttttgttgtattgcattaactgtatctcatgatacctatttgaaatttatcgtttaatagggaacagaactt |
36392933 |
T |
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| Q |
313 |
gttcaaggtatcgttttgaagtcatcaccatctatgtcatttgaagtgcagtg |
365 |
Q |
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| T |
36392932 |
gttcaaggtatcgttttgaagtcatcaccatctatgtcatttgaagtgcagtg |
36392880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 36399503 - 36399355
Alignment:
| Q |
15 |
caaaggggaa-ttttgctgaagcttttaggaaacatgaagaaaaattcactgagagtaaagggaagatacaaaagtggaggtatgcattgagagaggttg |
113 |
Q |
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|||||||||| ||||||||| ||||||| |||||||||||||||||| | ||| || |||| |||| | |||| |||||| |||||||||||||||||| |
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| T |
36399503 |
caaaggggaagttttgctgaggcttttaagaaacatgaagaaaaatttagtgaaagcaaagagaaggtgcaaaggtggagagatgcattgagagaggttg |
36399404 |
T |
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| Q |
114 |
ccaacttgtcaggctgggactctaaggatcagtaagtgtatgcctttaa |
162 |
Q |
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|||| || ||||| |||||||||||||||||||||||| |||||||||| |
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| T |
36399403 |
ccaatttctcagggtgggactctaaggatcagtaagtgcatgcctttaa |
36399355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 36408630 - 36408480
Alignment:
| Q |
15 |
caaaggggaa-ttttgctgaagcttttaggaaacatgaagaaaaattcactgagagtaaagggaagatacaaaagtggaggtatgcattgagagaggttg |
113 |
Q |
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|||||||||| |||||| || ||||||| |||||||||||| ||||| | ||| || |||| ||| | ||||||||||| |||||||||||||||||| |
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| T |
36408630 |
caaaggggaagttttgccgaggcttttaagaaacatgaagagaaatttagtgaaagcaaagagaaagtgcaaaagtggagagatgcattgagagaggttg |
36408531 |
T |
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| Q |
114 |
ccaacttgtcaggctgggactctaaggatcagtaagtgtatgcctttaatt |
164 |
Q |
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|||||||||| || |||||||| || || ||||||||| ||| |||||||| |
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| T |
36408530 |
ccaacttgtcggggtgggactccaaagaccagtaagtgaatggctttaatt |
36408480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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