View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_18 (Length: 375)
Name: NF15986_low_18
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 357
Target Start/End: Complemental strand, 6609149 - 6608795
Alignment:
| Q |
3 |
gaaggatgtagcagtgctctcaggtttacttccttcacaattattcgtatgaaaatgtttgtaacataacatgaataacatataaaacccattagagttg |
102 |
Q |
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| T |
6609149 |
gaaggatgtagcagtgctctcaggtttacttccttcacaattatttgtatgaaaatgtttgtaacataacatgaacaacatataaaacccattagagttg |
6609050 |
T |
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| Q |
103 |
gcctagtaaaagnnnnnnntgaatagcaaatatatgtctcaaataattttatttgataaggtcatcaaaacatttctcaattaatgtttaaatccttaac |
202 |
Q |
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| T |
6609049 |
gcctagtaaaagaaaacaatgaatagcaaatatatgtctcatataattttatctgataaggtcatcaaaacatttctctattaatgtttaaatccttaac |
6608950 |
T |
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| Q |
203 |
tccaaaagtttgggctagtagtaaaaagacataccttaaatccttaaaatttcattgaatctgnnnnnnnngaatttttacatatgagaccgaatggagt |
302 |
Q |
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| T |
6608949 |
tccaaaagtttgggctagtagtaaaaagacataccttaaatccttaaaatttcattgaatctgaaaaaaaagaatttttacatatgagaccgaatggatt |
6608850 |
T |
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| Q |
303 |
actagttagtgaagcgaccgatttcacgcgtgtattaactatatacaggttcaca |
357 |
Q |
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| T |
6608849 |
actagttagtgaagcgaccgatttcacgcgtgtattaactatatacaggtgcaca |
6608795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 44803733 - 44803774
Alignment:
| Q |
6 |
ggatgtagcagtgctctcaggtttacttccttcacaattatt |
47 |
Q |
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| T |
44803733 |
ggatgtagcagtgttatcaggtttgcttccttcacaattatt |
44803774 |
T |
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