View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_2 (Length: 635)
Name: NF15986_low_2
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 51 - 623
Target Start/End: Complemental strand, 2853497 - 2852923
Alignment:
| Q |
51 |
aaatggaaaatatatatataatttgataggagagtaaatggacataaatgaaacaccaaattcattattcaaaaacaccattttctggcattaat-tgaa |
149 |
Q |
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| T |
2853497 |
aaatgaaaaatatatatataatttaataggagagtaaatggacataaatgaaacaccaaattcattattcaaaaacaccattttctggcctgagtgtgaa |
2853398 |
T |
|
| Q |
150 |
tgcattgtaacactgagtaggctcatcaggtggtaaaactggttgcaaaagggaacctgatgagttatttcacaaatatcttgtgaaataactgaagata |
249 |
Q |
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| T |
2853397 |
tgcattttaacactgagtagactcatcaggtggtaaaactggttgcaaaagggaacctgatgagttatttcacaaatatcttgtgaaataactgaagata |
2853298 |
T |
|
| Q |
250 |
cttttcatgaacgatgcgggttataacttttattttaattatattgatttaaaccttgatatgctatcatatcatataaagcaatttcgcactggcatct |
349 |
Q |
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| T |
2853297 |
cttttcatgaacgatgctggttataacttttattgtacttttattgatttaaatttcgatgtgctatcatatcatgtaatgcaatttggcagtggcatcc |
2853198 |
T |
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| Q |
350 |
agttttatagggacgcttcatttaacatgattaattaaattgacaactgtatgagaaaactgactcgatcat---ttgtgttaatgtttgacagaaattc |
446 |
Q |
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| T |
2853197 |
agttttatagggacgcttcatttaacatgatcaattaaattg-caactgtataagataactgactagattatttattgtgttaatg-tggacagaaattc |
2853100 |
T |
|
| Q |
447 |
aggttctccatgatacaactcaaagatgtcgtattttgttcttctttccttctatgattcttcaattcaaaatcaaacatttcctcctcatcatgcacaa |
546 |
Q |
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| T |
2853099 |
gggttctctgtgttacagctcaaaggtgtcgtattttgttcttcatttcttatatggtgcttcaattcgaaataacacattttctcctcatcctgcacaa |
2853000 |
T |
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| Q |
547 |
atcaaggaaaatatggattccattcgctacgtgactttggcttttctgttttatttgtcatttggtgttttataatt |
623 |
Q |
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| T |
2852999 |
atcaaggaaaatgtggattccattcactaagtgactttggcttttctattttatttgttatttgctgttttataatt |
2852923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 342 - 623
Target Start/End: Complemental strand, 2835424 - 2835143
Alignment:
| Q |
342 |
tggcatctagttttatagggacgcttcatttaacatgattaattaaattgacaactgtatgagaaaactgactcgatcatttgtgttaatgtttgacaga |
441 |
Q |
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| T |
2835424 |
tggcatctagttttatagggacgcttcatttaacatgattaattaaattgacaactgtatgagaaaactgactcgattatttgtgttaatgtttgacaga |
2835325 |
T |
|
| Q |
442 |
aattcaggttctccatgatacaactcaaagatgtcgtattttgttcttctttccttctatgattcttcaattcaaaatcaaacatttcctcctcatcatg |
541 |
Q |
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| T |
2835324 |
aattcaggttctccatgatacaactcaaagatgtcgtattttgttcttctttccttctatgattcttcaattcaaaatcaaacatttcctcctcatcatg |
2835225 |
T |
|
| Q |
542 |
cacaaatcaaggaaaatatggattccattcgctacgtgactttggcttttctgttttatttgtcatttggtgttttataatt |
623 |
Q |
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| T |
2835224 |
cacaaatcaaggaaaatatggattccattcgctacgtgactttggcttttctgttttatttgtcatttggtgttttataatt |
2835143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 2835696 - 2835424
Alignment:
| Q |
1 |
acctaaactaaacaatgcacacatagtaaatactaaaattggagtcatgcaaatggaaaatatatatataatttgataggagagtaaatggacataaatg |
100 |
Q |
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| T |
2835696 |
acctaaactaaacaatgcacacatagtaaatactaaaattggagtcatgcaaatggaaaatatatatataatttgataggagagtaaatggacataaatg |
2835597 |
T |
|
| Q |
101 |
aaacaccaaattcattattcaaaaacaccattttctggcattaattgaatgcattgtaacactgagtaggctcatcaggtggtaaaactggttgcaaaag |
200 |
Q |
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| T |
2835596 |
aaacaccaaattcattattcaaaaacaccattttctggcattaattgaatgcattgtaacactgagtaggctcatcaggtggtaaaactggttgcaaaag |
2835497 |
T |
|
| Q |
201 |
ggaacctgatgagttatttcacaaatatcttgtgaaataactgaagatacttttcatgaacgatgcgggttat |
273 |
Q |
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| T |
2835496 |
ggaacctgatgagttatttcacaaatatcttgtgaaataactgaagatacttttcatgaacgatgctggttat |
2835424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 2800131 - 2800183
Alignment:
| Q |
14 |
aatgcacacatagtaaatactaaaattggagtcatgcaaatggaaaatatata |
66 |
Q |
| |
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| T |
2800131 |
aatgcacgcatagtaaatactaaaattggattaacacaagtggaaaatatata |
2800183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 448 - 623
Target Start/End: Complemental strand, 11115020 - 11114841
Alignment:
| Q |
448 |
ggttctccatgatacaactcaaagatgtcgtattttgttcttctttccttctatgattcttcaattcaaaatcaaacatttcctcctcatcatgcacaaa |
547 |
Q |
| |
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||||||| ||||||| |||||||||| | |||||||||||| |||| |||||| | |||||||||||||| ||| ||||||| ||| | |||| | |
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| T |
11115020 |
ggttctcaatgataccgctcaaagatggcagattttgttcttcattccatctatggtacttcaattcaaaataaaatatttccttctctgcctgcaacta |
11114921 |
T |
|
| Q |
548 |
tcaaggaaaatatggattccattcgctacgtgactttggcttttctgtttta--tttgtcatt--tggtgttttataatt |
623 |
Q |
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| T |
11114920 |
tcaagtaaaatgcggactccgttcacttagtgactttggcttttcaattttagttttgtcatttgtggtgttttataatt |
11114841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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