View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_29 (Length: 324)
Name: NF15986_low_29
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 42126877 - 42126572
Alignment:
| Q |
16 |
attatactccaggattaaagagaatttgttagttatggctgctcataannnnnnngtgttgactcttttcatggcttgtgagcatttgttgtttgttatg |
115 |
Q |
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| T |
42126877 |
attaaactccaggattaaagagaatttgtttgttatggctgctcataatttttttgtgtcgactcttttcatggcttgtgagcatttgttgtttgttatg |
42126778 |
T |
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| Q |
116 |
gctgctgagaaaattaaacttcagtaaat---------------cgaatgcatcaccgttttgtttgttatgctcacaattttgatggaaggaatagctc |
200 |
Q |
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| T |
42126777 |
gctgctgagaaaattaaactccagtaaattaaacttcagttaatcgaatgcatcaccgttttgtttgttatgctcacaattttgatggaaggaatagctc |
42126678 |
T |
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| Q |
201 |
ttaattggccattgaattgtttgtttgttatgctcacaaagtcattgctatgttttataggacgaagaannnnnnncccgtgatttctagaaacaaagct |
300 |
Q |
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| T |
42126677 |
ttaattggccattgaattgtttgtttgttatactcacaaagtcattgttatgttttataggacgaagaatttttttcccgtgatttctagaaacaaagct |
42126578 |
T |
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| Q |
301 |
agttct |
306 |
Q |
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|||||| |
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| T |
42126577 |
agttct |
42126572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 34190419 - 34190309
Alignment:
| Q |
159 |
ttttgtttgttatgctcacaattttgatggaaggaatagctcttaattggccattgaattgtttgtttgttatgctcacaaagtcattgctatgttttat |
258 |
Q |
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|||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |
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| T |
34190419 |
ttttgtttgttacgctcacaattttgatggaaggagtaactcttaattggccattgaattgtttgtttgttatgctcacaatgtcattgttatattttat |
34190320 |
T |
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| Q |
259 |
aggacgaagaa |
269 |
Q |
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| T |
34190319 |
aggatgaagaa |
34190309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 8615496 - 8615416
Alignment:
| Q |
182 |
ttgatggaaggaatagctcttaattggccattgaattgtttgtttgttatgctcacaaagtcattgctatgttttatagga |
262 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8615496 |
ttgatggaaggagtaactcttaattggccattgaattgtttgtttgttatgctcacaaagtcattgttatgttttatagga |
8615416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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