View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15986_low_3 (Length: 473)

Name: NF15986_low_3
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15986_low_3
NF15986_low_3
[»] chr8 (12 HSPs)
chr8 (17-456)||(4506673-4507106)
chr8 (186-331)||(15169106-15169251)
chr8 (186-331)||(15076424-15076569)
chr8 (247-335)||(15164368-15164456)
chr8 (257-331)||(15171998-15172072)
chr8 (109-294)||(15750930-15751112)
chr8 (247-331)||(14999896-14999980)
chr8 (247-329)||(13033142-13033224)
chr8 (184-329)||(15066473-15066618)
chr8 (184-329)||(15214825-15214970)
chr8 (186-241)||(15171944-15171999)
chr8 (419-456)||(15172141-15172178)
[»] chr7 (2 HSPs)
chr7 (172-294)||(1626999-1627121)
chr7 (171-294)||(1618433-1618556)
[»] chr3 (1 HSPs)
chr3 (184-292)||(3653159-3653267)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 4506673 - 4507106
Alignment:
Q  17 gaatggagcatgagtcccaaaaagccttggttcattcatgtttgataggttgatttgaaaactttggctatcactaccaccataaacattgtattcaaag 116  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4506673 gaatggaacatgagtcc-aaaaagccttggttcattcatgtttgataggttaatttgaaaactctggctatcactaccaccataaacattgtattcaaag 4506771  T
Q  117 aaaggcactagttcatgtgagttgaatttaagtaatggatgatcttctaattaaggaagagaaacgatggcgattaacaatggcaaatgtgagtgctttc 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  4506772 aaaggcactagttcatgtgaattgaatttaagtaatggatgatcttctaa----ggaagagaaatgatgacgattaacaatggcaaatgtgagtgctttc 4506867  T
Q  217 aaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgattttgaaaagagtgtataggttggattaaatttg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4506868 aaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgattttgaaaagagtttataggttggattaaatttg 4506967  T
Q  317 atggacaccaaaaaccttgnnnnnnnnnnnnnnntttgggatgcccccgacccttttactctaggaagtgagaggattaactgcttaaattcatggttta 416  Q
    |||||||||||||||||||               |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4506968 atggacaccaaaaaccttg-aaaaaaataaaaaatttgggatgccccccacccttttactctaggaagtgagaggattaactgcttaaattcatggttta 4507066  T
Q  417 ccttgtcttgttggcatgcttcttgtccatcccttgattg 456  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4507067 ccttgtcttgttggcatgcttcttgtccatcccttgattg 4507106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 186 - 331
Target Start/End: Original strand, 15169106 - 15169251
Alignment:
Q  186 gcgattaacaatggcaaatgtgagtgctttcaaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgattt 285  Q
    |||||| ||||| | |||||| |||||| |||||||||| ||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||||    
T  15169106 gcgatttacaattgtaaatgtaagtgctctcaaccaagtggtgcctgattttggtaagcttgcaacaacaatatcactatctttggcttgaaaatgattt 15169205  T
Q  286 tgaaaagagtgtataggttggattaaatttgatggacaccaaaaac 331  Q
    |||||||||  |||||||||||| ||||||||||||||||||||||    
T  15169206 tgaaaagagattataggttggatcaaatttgatggacaccaaaaac 15169251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 186 - 331
Target Start/End: Complemental strand, 15076569 - 15076424
Alignment:
Q  186 gcgattaacaatggcaaatgtgagtgctttcaaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgattt 285  Q
    |||||||||||| | |||||| | |||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||  |||    
T  15076569 gcgattaacaattgtaaatgtaaatgctctcaaccaagtggtgcctgattttggtaagctagcaacaacaatatcattgtgtttggcttggaaattgttt 15076470  T
Q  286 tgaaaagagtgtataggttggattaaatttgatggacaccaaaaac 331  Q
    |||||||||  |||||||||||| | ||||||||||||||||||||    
T  15076469 tgaaaagagattataggttggatcatatttgatggacaccaaaaac 15076424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 335
Target Start/End: Complemental strand, 15164456 - 15164368
Alignment:
Q  247 gcaacaacaatatcattgtctttggcttgaaaatgattttgaaaagagtgtataggttggattaaatttgatggacaccaaaaaccttg 335  Q
    |||||||||| | |||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||  |||||||||||||||    
T  15164456 gcaacaacaacagcattgtctttagcttgaaaatcattttgaacagagtttataggttggattaaatttgatcaacaccaaaaaccttg 15164368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 15171998 - 15172072
Alignment:
Q  257 tatcattgtctttggcttgaaaatgattttgaaaagagtgtataggttggattaaatttgatggacaccaaaaac 331  Q
    ||||||||| ||||||||| ||||  ||||||||||||  |||||||||||| | ||||||||||||||||||||    
T  15171998 tatcattgtgtttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaaac 15172072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 294
Target Start/End: Complemental strand, 15751112 - 15750930
Alignment:
Q  109 attcaaagaaaggcactagttcatgtgagttgaatttaagtaatggatgatcttctaattaaggaagagaaacgatggcgattaacaatggcaaatgtga 208  Q
    |||| ||| ||||||| |||||||| || ||  || |||||||||||||||  |||||     |||||||||||||  ||||||||||| ||||| || |    
T  15751112 attccaaggaaggcacaagttcatgagaattagatgtaagtaatggatgattctctaaa----gaagagaaacgattacgattaacaatagcaaaggtta 15751017  T
Q  209 gtgctttcaaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtcttt-ggcttgaaaatgattttgaaaagag 294  Q
    | ||||||||||| ||||| || | |||||| |     |||||||||| |||| | ||||| |||||||||||||||||||||||||    
T  15751016 gggctttcaaccatgttgttccagtttttggcatagaggcaacaacaacatcactatcttttggcttgaaaatgattttgaaaagag 15750930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 331
Target Start/End: Complemental strand, 14999980 - 14999896
Alignment:
Q  247 gcaacaacaatatcattgtctttggcttgaaaatgattttgaaaagagtgtataggttggattaaatttgatggacaccaaaaac 331  Q
    ||||||| || |||| | ||||||| |||||||| |||| ||||||||| |||||||||||||||  ||| ||||||||||||||    
T  14999980 gcaacaataacatcactatctttggtttgaaaattatttcgaaaagagtttataggttggattaatattggtggacaccaaaaac 14999896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 13033224 - 13033142
Alignment:
Q  247 gcaacaacaatatcattgtctttggcttgaaaatgattttgaaaagagtgtataggttggattaaatttgatggacaccaaaa 329  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||| ||  | || |||||| | || |||||||||||||||    
T  13033224 gcaacaacaatatcattgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaa 13033142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 329
Target Start/End: Complemental strand, 15066618 - 15066473
Alignment:
Q  184 tggcgattaacaatggcaaatgtgagtgctttcaaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgat 283  Q
    |||||||||||||| ||| |||  ||  |||| | |||||| ||||| |||||||| | |   ||||| ||||||||| | |||||||| ||||||| ||    
T  15066618 tggcgattaacaatagcatatgcaagacctttaagccaagtagtgccagattttggcatggatgcaactacaatatcactatctttggcatgaaaattat 15066519  T
Q  284 tttgaaaagagtgtataggttggattaaatttgatggacaccaaaa 329  Q
    ||||||||||||  | || |||||| | | ||||||||||||||||    
T  15066518 tttgaaaagagttcacagattggataagagttgatggacaccaaaa 15066473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 329
Target Start/End: Original strand, 15214825 - 15214970
Alignment:
Q  184 tggcgattaacaatggcaaatgtgagtgctttcaaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgat 283  Q
    |||||||||||||| ||| |||  ||  |||| | |||||| ||||| |||||||| | |   ||||||||||||||| ||||||| || ||||||| ||    
T  15214825 tggcgattaacaatagcatatgcaagacctttaagccaagtagtgccagattttggaatggatgcaacaacaatatcactgtctttagcatgaaaattat 15214924  T
Q  284 tttgaaaagagtgtataggttggattaaatttgatggacaccaaaa 329  Q
    ||||||||||||  | || ||| || | | ||||||||||||||||    
T  15214925 tttgaaaagagttcacagattgaataagagttgatggacaccaaaa 15214970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 15171944 - 15171999
Alignment:
Q  186 gcgattaacaatggcaaatgtgagtgctttcaaccaagttgtgccggattttggta 241  Q
    |||||| ||||| | |||||| |||||| |||||||||||||||| ||||||||||    
T  15171944 gcgatttacaattgtaaatgtaagtgctctcaaccaagttgtgcctgattttggta 15171999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Original strand, 15172141 - 15172178
Alignment:
Q  419 ttgtcttgttggcatgcttcttgtccatcccttgattg 456  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  15172141 ttgtcttgttggcttgcttcttgtccatcctttgattg 15172178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 294
Target Start/End: Original strand, 1626999 - 1627121
Alignment:
Q  172 gaagagaaacgatggcgattaacaatggcaaatgtgagtgctttcaaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtctttgg 271  Q
    ||||||||| |||||||||||| ||||||||| || || ||||||||||| ||||| || |||||||| |   | |||||||| | |||| | || || |    
T  1626999 gaagagaaatgatggcgattaataatggcaaaggttagggctttcaaccatgttgttcctgattttggaacagtggcaacaaccacatcactatccttag 1627098  T
Q  272 cttgaaaatgattttgaaaagag 294  Q
    ||||||| || ||||||||||||    
T  1627099 cttgaaagtggttttgaaaagag 1627121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 1618433 - 1618556
Alignment:
Q  171 ggaagagaaacgatggcgattaacaatggcaaatgtgagtgctttcaaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtctttg 270  Q
    |||||| ||| |||||||||||| ||| ||||| || || ||||||||||| ||||| || |||||||| |     |||| ||||| |||| | |||||     
T  1618433 ggaagaaaaatgatggcgattaataattgcaaaggttagggctttcaaccatgttgttcctgattttggcatagaggcaataacaacatcactatcttta 1618532  T
Q  271 gcttgaaaatgattttgaaaagag 294  Q
    |||||||||| |||||||||||||    
T  1618533 gcttgaaaatcattttgaaaagag 1618556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 3653159 - 3653267
Alignment:
Q  184 tggcgattaacaatggcaaatgtgagtgctttcaaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgat 283  Q
    |||||||| | ||||||| | || || ||||| |||||||||||||| |||||||||| | | ||||||| || |||| | ||||| ||||| ||||| |    
T  3653159 tggcgattcataatggcataggtaagagcttttaaccaagttgtgcctgattttggtacggttgcaacaaaaacatcactttctttagcttggaaatgct 3653258  T
Q  284 tttgaaaag 292  Q
    |||| ||||    
T  3653259 tttggaaag 3653267  T

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