View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_31 (Length: 308)
Name: NF15986_low_31
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 41648627 - 41648348
Alignment:
| Q |
13 |
aaaatcccaaatctaatcaaatcaaatcaaattcaaccttatggctgctgctgctgcgtttcgatcaaaaccttcaaaggaaaaagcaaccctcgcgtta |
112 |
Q |
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| T |
41648627 |
aaaatcccaaatctaatctaatcaaatcaaattcaaccttatggctgctgctgctgcgtttcgatcaaaaccttcaaaggaaaaagcaaccctcgcgtta |
41648528 |
T |
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| Q |
113 |
tctcaattacgctacttcgcattcaattacacccacgctggtcattcacactctccaccacgttcaccgttaatcaacaccccttatcacttcacttcct |
212 |
Q |
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| T |
41648527 |
tctcaattacgctacttcgcattcaattacacccacgctggtcattcacactctccaccacgttcaccgttaatcaacaccccttatcacttcacttcct |
41648428 |
T |
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| Q |
213 |
tcaaatccctttctctccgcggcggcgatttcatccataagagtagtaataataatactactactgcctccacttccacc |
292 |
Q |
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| T |
41648427 |
tcaaacccctttctctccgcggcgtcgatttcatccataagagtagtaataataatacttctactgcctccacttccacc |
41648348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 140693 - 140736
Alignment:
| Q |
183 |
taatcaacaccccttatcacttcacttccttcaaatccctttct |
226 |
Q |
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| T |
140693 |
taatcaacactccttatcacttcacttccttaaaacccctttct |
140736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 148714 - 148757
Alignment:
| Q |
183 |
taatcaacaccccttatcacttcacttccttcaaatccctttct |
226 |
Q |
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| T |
148714 |
taatcaacactccttatcacttcacttccttaaaacccctttct |
148757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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