View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_32 (Length: 296)
Name: NF15986_low_32
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_32 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 106 - 280
Target Start/End: Complemental strand, 37881902 - 37881728
Alignment:
| Q |
106 |
tgttcgtatcctactgatcaggttgagcttgccagtgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaat |
205 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37881902 |
tgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaat |
37881803 |
T |
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| Q |
206 |
aacaggatcagctacaccccaactgcctctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
280 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37881802 |
aacaggatcagctacaccccaactacctctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
37881728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 112 - 280
Target Start/End: Complemental strand, 37855668 - 37855500
Alignment:
| Q |
112 |
tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacagg |
211 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37855668 |
tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacagg |
37855569 |
T |
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| Q |
212 |
atcagctacaccccaactgcctctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
280 |
Q |
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| T |
37855568 |
atcagctacaccccaactacctctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
37855500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 112 - 280
Target Start/End: Complemental strand, 37867856 - 37867688
Alignment:
| Q |
112 |
tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacagg |
211 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37867856 |
tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacagg |
37867757 |
T |
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| Q |
212 |
atcagctacaccccaactgcctctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
280 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37867756 |
atcagctacaccccaactacctctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
37867688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 112 - 280
Target Start/End: Complemental strand, 37911841 - 37911673
Alignment:
| Q |
112 |
tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacagg |
211 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911841 |
tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacagg |
37911742 |
T |
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| Q |
212 |
atcagctacaccccaactgcctctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
280 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911741 |
atcagctacaccccaactacctctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
37911673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37882007 - 37881940
Alignment:
| Q |
1 |
agattgttcatatttacattaattggcatagttcacaaatgataatcaataactaattacatcagaga |
68 |
Q |
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||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
37882007 |
agattattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagaga |
37881940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37911956 - 37911890
Alignment:
| Q |
1 |
agattgttcatatttacattaattggcatagttcacaaatgataatcaataactaattacatcagag |
67 |
Q |
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||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
37911956 |
agattattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagag |
37911890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 112 - 280
Target Start/End: Original strand, 27236 - 27404
Alignment:
| Q |
112 |
tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacagg |
211 |
Q |
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|||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27236 |
tatcctactgatcaggttgaccttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacagg |
27335 |
T |
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| Q |
212 |
atcagctacaccccaactgcctctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
280 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27336 |
atcagctacaccccaactacctctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
27404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 103 - 268
Target Start/End: Original strand, 6571 - 6736
Alignment:
| Q |
103 |
gattgttcgtatcctactgatcaggttgagcttgccagtgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtc |
202 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6571 |
gattgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaattcgtttcttgtattgagcaatgaatgctgtagctctcatgtc |
6670 |
T |
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| Q |
203 |
aataacaggatcagctacaccccaactgcctctgtcttcatcacttggccacactttgttatcata |
268 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||| |
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| T |
6671 |
aataacaggatcagctacaccccaacttcctctatcttcatcacttggccatactttgttagcata |
6736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 112 - 268
Target Start/End: Original strand, 16908 - 17064
Alignment:
| Q |
112 |
tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacagg |
211 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908 |
tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacagg |
17007 |
T |
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| Q |
212 |
atcagctacaccccaactgcctctgtcttcatcacttggccacactttgttatcata |
268 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||| |
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| T |
17008 |
atcagctacaccccaacttcctctatcttcatcacttggccatactttgttagcata |
17064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 6473 - 6533
Alignment:
| Q |
7 |
ttcatatttacattaattggcatagttcacaaatgataatcaataactaattacatcagag |
67 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
6473 |
ttcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagag |
6533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 45759321 - 45759409
Alignment:
| Q |
165 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatcacttggcca |
253 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||| ||||| |
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| T |
45759321 |
ttcttgtatcgagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
45759409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 9239670 - 9239716
Alignment:
| Q |
234 |
ctgtcttcatcacttggccacactttgttatcatatgaagcattatc |
280 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9239670 |
ctgtcttcatcactaggccacactttgttatcatatgaagcattatc |
9239716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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