View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15986_low_34 (Length: 288)

Name: NF15986_low_34
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15986_low_34
NF15986_low_34
[»] chr6 (12 HSPs)
chr6 (1-270)||(11525671-11525940)
chr6 (1-42)||(7586210-7586251)
chr6 (1-42)||(11235700-11235741)
chr6 (1-42)||(18555471-18555512)
chr6 (1-42)||(19289334-19289375)
chr6 (1-42)||(21128282-21128323)
chr6 (1-42)||(12953084-12953125)
chr6 (1-42)||(18498821-18498862)
chr6 (2-42)||(31931624-31931664)
chr6 (1-42)||(11206147-11206188)
chr6 (1-42)||(25518891-25518932)
chr6 (1-37)||(9933624-9933660)
[»] chr7 (10 HSPs)
chr7 (86-238)||(30220778-30220930)
chr7 (1-42)||(29590229-29590270)
chr7 (1-42)||(26209571-26209612)
chr7 (1-37)||(3476363-3476399)
chr7 (1-42)||(8998956-8998997)
chr7 (1-42)||(11087067-11087108)
chr7 (1-37)||(8933762-8933798)
chr7 (1-37)||(12734189-12734225)
chr7 (1-37)||(13682562-13682598)
chr7 (1-37)||(48382388-48382424)
[»] chr5 (6 HSPs)
chr5 (86-238)||(17628959-17629111)
chr5 (1-42)||(20168127-20168168)
chr5 (1-42)||(13405168-13405209)
chr5 (1-42)||(13533968-13534009)
chr5 (1-42)||(20416964-20417005)
chr5 (2-30)||(35543190-35543218)
[»] chr3 (6 HSPs)
chr3 (86-238)||(32021176-32021328)
chr3 (1-42)||(51989086-51989127)
chr3 (1-42)||(21736361-21736402)
chr3 (1-43)||(10529400-10529442)
chr3 (1-42)||(2246618-2246659)
chr3 (5-42)||(31113933-31113970)
[»] chr8 (11 HSPs)
chr8 (1-42)||(19461211-19461252)
chr8 (1-42)||(19558889-19558930)
chr8 (1-42)||(22167000-22167041)
chr8 (1-42)||(3843785-3843826)
chr8 (1-42)||(7018358-7018399)
chr8 (1-42)||(20259594-20259635)
chr8 (1-42)||(21046224-21046265)
chr8 (1-42)||(22211365-22211406)
chr8 (5-34)||(22135839-22135868)
chr8 (1-42)||(23271181-23271222)
chr8 (1-42)||(23370811-23370852)
[»] chr4 (7 HSPs)
chr4 (1-42)||(55651594-55651635)
chr4 (1-42)||(14778412-14778453)
chr4 (1-42)||(17993763-17993804)
chr4 (1-42)||(18774625-18774666)
chr4 (1-32)||(19244058-19244089)
chr4 (1-42)||(14710748-14710789)
chr4 (1-42)||(23509387-23509428)
[»] chr2 (7 HSPs)
chr2 (1-42)||(19497952-19497993)
chr2 (1-42)||(967464-967505)
chr2 (1-42)||(19299971-19300012)
chr2 (1-42)||(19312978-19313019)
chr2 (1-42)||(21025488-21025529)
chr2 (1-42)||(24275252-24275293)
chr2 (1-42)||(17969170-17969211)
[»] chr1 (13 HSPs)
chr1 (1-42)||(23065004-23065045)
chr1 (1-42)||(5929758-5929799)
chr1 (1-38)||(19038066-19038103)
chr1 (1-42)||(44201067-44201108)
chr1 (1-42)||(45070639-45070680)
chr1 (1-42)||(46180865-46180906)
chr1 (1-42)||(52350670-52350711)
chr1 (1-32)||(28474292-28474323)
chr1 (1-42)||(675626-675667)
chr1 (1-34)||(20799127-20799160)
chr1 (1-42)||(22609960-22610001)
chr1 (1-37)||(14388111-14388147)
chr1 (1-37)||(18310957-18310993)
[»] scaffold0280 (1 HSPs)
scaffold0280 (1-43)||(17820-17862)
[»] scaffold0185 (1 HSPs)
scaffold0185 (1-43)||(9351-9393)
[»] scaffold0774 (1 HSPs)
scaffold0774 (1-42)||(6346-6387)
[»] scaffold0752 (1 HSPs)
scaffold0752 (1-42)||(2053-2094)
[»] scaffold0410 (1 HSPs)
scaffold0410 (1-42)||(15962-16003)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-42)||(35770-35811)
[»] scaffold0090 (2 HSPs)
scaffold0090 (1-42)||(879-920)
scaffold0090 (1-42)||(5259-5300)
[»] scaffold0073 (1 HSPs)
scaffold0073 (1-42)||(58534-58575)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-42)||(61277-61318)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-32)||(12807-12838)
[»] scaffold0254 (1 HSPs)
scaffold0254 (1-32)||(22106-22137)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-32)||(28778-28809)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-30)||(40327-40356)
scaffold0017 (1-30)||(58873-58902)
[»] scaffold0012 (2 HSPs)
scaffold0012 (1-30)||(7632-7661)
scaffold0012 (1-42)||(127879-127920)
[»] scaffold0201 (1 HSPs)
scaffold0201 (1-37)||(7469-7505)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 11525671 - 11525940
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattgagtagcatcaaagaagattttagtattttggaagacaattcaacttggcttcttggaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11525671 caacgttcatttgaaaagcactgggtgcttgtccttcattgagtagcatcaaagaagattttagtattttggaagacaattcaacttggcttcttggaaa 11525770  T
Q  101 tggtgaaaagattaatttctggaatgatagttggtgtggtgcccccctctctcaggccttgaatatccctcaagcaatctcatctcatctttcctctact 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11525771 tggtgaaaagattaatttctggaatgatagctggtgtggtgcccccctctctcaggccttgaatatccctcaagcaatctcatctcatctttcctctact 11525870  T
Q  201 gttagtgattacattgttaatggtgagtggagtattccagctgatttaactcatatgtttcaatctctta 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11525871 gttagtgattacattgttaatggtgagtggagtattccagctgatttaactcatatgtttcaatctctta 11525940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7586210 - 7586251
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  7586210 caacgttcatttgaaaagcactgggtgcttgtccttcattga 7586251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11235741 - 11235700
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  11235741 caacgttcatttgaaaagcactgggtgcttgtccttcattga 11235700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18555512 - 18555471
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  18555512 caacgttcatttgaaaagcactgggtgcttgtacctcattga 18555471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19289334 - 19289375
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  19289334 caacgttcatttgaaaagcactgggtgcttgtccttcattga 19289375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21128323 - 21128282
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  21128323 caacgttcatttgaaaagcactgggtgcttgtccttcattga 21128282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12953084 - 12953125
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  12953084 caacgttcatttgaaaagcactaggtgcttgtacctcattga 12953125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18498862 - 18498821
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||| ||| |||||||    
T  18498862 caacgttcatttgaaaagcactgggtgcttatacatcattga 18498821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 31931664 - 31931624
Alignment:
Q  2 aacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  31931664 aacgttcatttgaaaagcactgggtgcttgtccctcattga 31931624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11206188 - 11206147
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||| ||||||||||| | |||||||    
T  11206188 caacgttcatttgaaaagcattgggtgcttgtccatcattga 11206147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25518932 - 25518891
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||| ||||||||||||||||||||| |||||||||    
T  25518932 caacggtcatctgaaaagcactgggtgcttgtccttcattga 25518891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9933624 - 9933660
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttc 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  9933624 caacggtcatttgaaaagcactgggtgcttgtccttc 9933660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 238
Target Start/End: Original strand, 30220778 - 30220930
Alignment:
Q  86 ttggcttcttggaaatggtgaaaagattaatttctggaatgatagttggtgtggtgcccccctctctcaggccttgaatatccctcaagcaatctcatct 185  Q
    |||||| ||||| |||||| |||| || | ||||||||||||||| |||||||| || ||||| ||||| ||||| |  || ||| | ||||| |||  |    
T  30220778 ttggctccttggtaatggtcaaaatatcagtttctggaatgatagctggtgtggagcacccctttctcaagccttaagcattcctgatgcaatatcagtt 30220877  T
Q  186 catctttcctctactgttagtgattacattgttaatggtgagtggagtattcc 238  Q
    ||| | || || ||||||||||||||||||||||||||||| |||||||||||    
T  30220878 catttatcttcaactgttagtgattacattgttaatggtgaatggagtattcc 30220930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29590270 - 29590229
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  29590270 caacgttcatttgaaaagcactgggtgcttgtccttcattga 29590229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26209571 - 26209612
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  26209571 caacggtcatttgaaaagcactgggtgcttgtccttcattga 26209612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3476363 - 3476399
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttc 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  3476363 caacgttcatttgaaaagcactgggtgcttgtccttc 3476399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8998956 - 8998997
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||| |||||||||||  ||||||||    
T  8998956 caacgttcatttgaaaagcattgggtgcttgtctttcattga 8998997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11087067 - 11087108
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||| ||||||||||| ||||||||||| |||||||||    
T  11087067 caacgttcgtttgaaaagcattgggtgcttgtccttcattga 11087108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8933798 - 8933762
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttc 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  8933798 caacggtcatttgaaaagcactgggtgcttgtccttc 8933762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12734189 - 12734225
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttc 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  12734189 caacggtcatttgaaaagcactgggtgcttgtccttc 12734225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13682598 - 13682562
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttc 37  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  13682598 caacgttcatttgaaaatcactgggtgcttgtccttc 13682562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48382424 - 48382388
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttc 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  48382424 caacggtcatttgaaaagcactgggtgcttgtccttc 48382388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 238
Target Start/End: Complemental strand, 17629111 - 17628959
Alignment:
Q  86 ttggcttcttggaaatggtgaaaagattaatttctggaatgatagttggtgtggtgcccccctctctcaggccttgaatatccctcaagcaatctcatct 185  Q
    |||||| ||||| |||||| |||| || | ||||||||||||||| |||||||| || ||||| ||||| ||||| |  || ||| | ||||| |||  |    
T  17629111 ttggctccttggtaatggtcaaaatatcagtttctggaatgatagctggtgtggagcacccctttctcaagccttaagcattcctgatgcaatatcagtt 17629012  T
Q  186 catctttcctctactgttagtgattacattgttaatggtgagtggagtattcc 238  Q
    ||| | || || ||||||||||||||||||||||||||||| |||||||||||    
T  17629011 catttatcttcaactgttagtgattacattgttaatggtgaatggagtattcc 17628959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20168127 - 20168168
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  20168127 caacgttcatttgaaaagcactgggtgcttgtccttcattga 20168168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13405209 - 13405168
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  13405209 caacgttcattagaaaagcactgggtgcttgtccttcattga 13405168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13534009 - 13533968
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  13534009 caacgttcatttgaaaagcactgggtgcttgtccctcattga 13533968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20416964 - 20417005
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  20416964 caacggtcatttgaaaagcactgggtgcttgtccttcattga 20417005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 35543190 - 35543218
Alignment:
Q  2 aacgttcatttgaaaagcactgggtgctt 30  Q
    |||||||||||||||||||||||||||||    
T  35543190 aacgttcatttgaaaagcactgggtgctt 35543218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 238
Target Start/End: Original strand, 32021176 - 32021328
Alignment:
Q  86 ttggcttcttggaaatggtgaaaagattaatttctggaatgatagttggtgtggtgcccccctctctcaggccttgaatatccctcaagcaatctcatct 185  Q
    |||||| ||||| |||||| |||| || | ||||||||||||||| |||||||| || ||||| ||||| ||||| |  || ||| | ||||| |||  |    
T  32021176 ttggctccttggtaatggtcaaaatatcagtttctggaatgatagctggtgtggagcacccctttctcaagccttaagcattcctgatgcaatatcagtt 32021275  T
Q  186 catctttcctctactgttagtgattacattgttaatggtgagtggagtattcc 238  Q
    ||| | || || ||||||||||||||||||||||||||||| |||||||||||    
T  32021276 catttatcttcaactgttagtgattacattgttaatggtgaatggagtattcc 32021328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 51989086 - 51989127
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  51989086 caacgttcatttgaaaagcactgggtgcttgtccttcattga 51989127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21736402 - 21736361
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  21736402 caacgttcatttgaaaagcactgggtgcttgtccctcattga 21736361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10529442 - 10529400
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattgag 43  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||    
T  10529442 caacgttcgtttgaaaagcattgggtgcttgtccttcattgag 10529400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2246659 - 2246618
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||| |||| |||| |||||||||    
T  2246659 caacgttcatttgaaaagcactaggtgtttgtccttcattga 2246618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 31113933 - 31113970
Alignment:
Q  5 gttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  31113933 gttcatttgaaaagcactaggtgcttgtccttcattga 31113970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19461252 - 19461211
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  19461252 caacgttcatttgaaaagcactgggtgcttgtccttcattga 19461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19558930 - 19558889
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  19558930 caacgttcatttgaaaagcactgggtgcttgtccttcattga 19558889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22167000 - 22167041
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  22167000 caacgttcatttgaaaagcactgggtgcttgtacctcattga 22167041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3843826 - 3843785
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  3843826 caacggtcatttgaaaagcactgggtgcttgtccttcattga 3843785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7018358 - 7018399
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  7018358 caacgttcatttgaaaagcactgggtgtttgtccttcattga 7018399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20259594 - 20259635
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  20259594 caacggtcatttgaaaagcactgggtgcttgtccttcattga 20259635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21046224 - 21046265
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  21046224 caacggtcatttgaaaagcactgggtgcttgtccttcattga 21046265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22211365 - 22211406
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  22211365 caacgttcatttgaaaaacactgggtgcttgtacctcattga 22211406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 22135839 - 22135868
Alignment:
Q  5 gttcatttgaaaagcactgggtgcttgtac 34  Q
    ||||||||||||||||||||||||||||||    
T  22135839 gttcatttgaaaagcactgggtgcttgtac 22135868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23271181 - 23271222
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||||||||| || ||||||||||| |||||||||    
T  23271181 caacgttcatttgaaaaacattgggtgcttgtccttcattga 23271222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23370852 - 23370811
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||||||||||||||||||||||| |||| ||||    
T  23370852 caacggtcatttgaaaagcactgggtgcttgtccttctttga 23370811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 55651635 - 55651594
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  55651635 caacgttcatttgaaaagcactgggtgcttgtccttcattga 55651594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14778412 - 14778453
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  14778412 caacgttcattagaaaagcactgggtgcttgtccttcattga 14778453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17993763 - 17993804
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  17993763 caacgttcacttgaaaagcactgggtgcttgtccttcattga 17993804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18774625 - 18774666
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  18774625 caacgttcatttgaaaagcactgggtgtttgtccttcattga 18774666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 19244089 - 19244058
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgt 32  Q
    ||||||||||||||||||||||||||||||||    
T  19244089 caacgttcatttgaaaagcactgggtgcttgt 19244058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14710748 - 14710789
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||| |||||||||| ||||||||| |||||||||    
T  14710748 caacgttcattagaaaagcactaggtgcttgtccttcattga 14710789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23509428 - 23509387
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||| ||||||||||||||||||||| ||| |||||||    
T  23509428 caacgttcgtttgaaaagcactgggtgcttttacctcattga 23509387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19497952 - 19497993
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  19497952 caacgttcatttgaaaagcactgggtgcttgtccttcattga 19497993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 967464 - 967505
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  967464 caacggtcatttgaaaagcactgggtgcttgtccttcattga 967505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19299971 - 19300012
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  19299971 caacgttcatttgaaaagcactgggtgtttgtccttcattga 19300012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19312978 - 19313019
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  19312978 caacgttcatttgaaaagcactgtgtgcttgtccttcattga 19313019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21025488 - 21025529
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  21025488 caacgttcatttgaaaagcattgggtgcttgtccttcattga 21025529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24275293 - 24275252
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  24275293 caacggtcatttgaaaagcactgggtgcttgtccttcattga 24275252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17969170 - 17969211
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| ||||||||||||||||||||||| || |||||||||    
T  17969170 caacggtcatttgaaaagcactgggtgctcgtccttcattga 17969211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23065045 - 23065004
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  23065045 caacgttcatttgaaaagcactgggtgcttgtccttcattga 23065004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5929799 - 5929758
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| ||| |||||    
T  5929799 caacgttcatttgaaaagcactgggtgcttgtcctttattga 5929758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19038103 - 19038066
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttca 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  19038103 caacgttcatttgaaaagcactgggtgcttgtccttca 19038066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44201108 - 44201067
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  44201108 caacgttcatttgaaaagcactgagtgcttgtccttcattga 44201067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45070639 - 45070680
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  45070639 caacgttcatttgaaaagcactgggtgcctgtccttcattga 45070680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 46180865 - 46180906
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  46180865 caacgttcatttgaaaagcactgggtgcttgtccctcattga 46180906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 52350670 - 52350711
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  52350670 caacgttcacttgaaaagcactgggtgcttgtccttcattga 52350711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 28474323 - 28474292
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgt 32  Q
    ||||||||||||||||||||||||||||||||    
T  28474323 caacgttcatttgaaaagcactgggtgcttgt 28474292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 675667 - 675626
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||||||||||||| ||||||||| |||||||||    
T  675667 caacggtcatttgaaaagcactcggtgcttgtccttcattga 675626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20799160 - 20799127
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtac 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  20799160 caacgttcatttggaaagcactgggtgcttgtac 20799127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22609960 - 22610001
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| ||||||||||||||||| |||||||||| |||||||    
T  22609960 caacgctcatttgaaaagcactgagtgcttgtacctcattga 22610001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14388111 - 14388147
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttc 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  14388111 caacggtcatttgaaaagcactgggtgcttgtccttc 14388147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18310957 - 18310993
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttc 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  18310957 caacggtcatttgaaaagcactgggtgcttgtccttc 18310993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17820 - 17862
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattgag 43  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  17820 caacgttcatttgaaaagcattgggtgcttgtccttcattgag 17862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9393 - 9351
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattgag 43  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  9393 caacgttcatttgaaaagcattgggtgcttgtccttcattgag 9351  T

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Target: scaffold0774 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6346 - 6387
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  6346 caacgttcatttgaaaagcactgggtgcttgtccctcattga 6387  T

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Target: scaffold0752 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0752
Description:

Target: scaffold0752; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2094 - 2053
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  2094 caacgttcatttgaaaagcactgggtgcctgtccttcattga 2053  T

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Target: scaffold0410 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0410
Description:

Target: scaffold0410; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16003 - 15962
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  16003 caacggtcatttgaaaagcactgggtgcttgtccttcattga 15962  T

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Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35811 - 35770
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| |||| ||||    
T  35811 caacgttcatttgaaaagcactgggtgcttgtccttctttga 35770  T

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Target: scaffold0090 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 920 - 879
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  920 caacgttcatttgaaaagcactgtgtgcttgtccttcattga 879  T

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Target: scaffold0090; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5300 - 5259
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  5300 caacgttcatttgaaaagcactgtgtgcttgtccttcattga 5259  T

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Target: scaffold0073 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 58575 - 58534
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  58575 caacgttcatttgaaaagcactgggtgcttgttcctcattga 58534  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 61318 - 61277
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  61318 caacgttcattagaaaagcactgggtgcttgtccttcattga 61277  T

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Target: scaffold0481 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 12807 - 12838
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgt 32  Q
    ||||||||||||||||||||||||||||||||    
T  12807 caacgttcatttgaaaagcactgggtgcttgt 12838  T

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Target: scaffold0254 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 22137 - 22106
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgt 32  Q
    ||||||||||||||||||||||||||||||||    
T  22137 caacgttcatttgaaaagcactgggtgcttgt 22106  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 28778 - 28809
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgt 32  Q
    ||||||||||||||||||||||||||||||||    
T  28778 caacgttcatttgaaaagcactgggtgcttgt 28809  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 40327 - 40356
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgctt 30  Q
    ||||||||||||||||||||||||||||||    
T  40327 caacgttcatttgaaaagcactgggtgctt 40356  T

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Target: scaffold0017; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 58873 - 58902
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgctt 30  Q
    ||||||||||||||||||||||||||||||    
T  58873 caacgttcatttgaaaagcactgggtgctt 58902  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7632 - 7661
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgctt 30  Q
    ||||||||||||||||||||||||||||||    
T  7632 caacgttcatttgaaaagcactgggtgctt 7661  T

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Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 127920 - 127879
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttcattga 42  Q
    ||||| |||||| ||||||||||||||||||| |||||||||    
T  127920 caacggtcatttaaaaagcactgggtgcttgtccttcattga 127879  T

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Target: scaffold0201 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7505 - 7469
Alignment:
Q  1 caacgttcatttgaaaagcactgggtgcttgtacttc 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  7505 caacggtcatttgaaaagcactgggtgcttgtccttc 7469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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