View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_35 (Length: 287)
Name: NF15986_low_35
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 64 - 267
Target Start/End: Original strand, 1723387 - 1723599
Alignment:
| Q |
64 |
agcacgtttgcaaagaaaacaactaggaacgagggagtaaatctac---------agacactaaccagagttctaaactcatcttcggtgagatgaaaaa |
154 |
Q |
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| T |
1723387 |
agcacgtttgcaaagaaaacaactaggaacgagggagtaaatctacagacactacagacactaaccagagttctaaactcatcttcggtgagatgaaaaa |
1723486 |
T |
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| Q |
155 |
aggccaggcacactttaggatcctgtgatgtttttgtaattggtattattaattgtcaaatgcatatgagaagagaggtaattaattacaggattgcaat |
254 |
Q |
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| T |
1723487 |
aggccaggcacactttagggtcctgtgatgtttttgtaattggtattattaattgtcaaatgcatatgagaagagaggtaatttattacaggattgcaat |
1723586 |
T |
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| Q |
255 |
atactactagtat |
267 |
Q |
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|||||||| |||| |
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| T |
1723587 |
atactactcgtat |
1723599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1723177 - 1723240
Alignment:
| Q |
1 |
gtcattgcattatgtttccacaacacttactgacatggaatatgaataagaagctaaaaatata |
64 |
Q |
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| T |
1723177 |
gtcattgcattatttttccacaacacttactgacatggaatatgaataagaagctaaaaatata |
1723240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 10304455 - 10304299
Alignment:
| Q |
1 |
gtcattgcattatgtttccacaacacttactgacatggaatatgaataagaagct-aaaaatatagcacgtttgcaaagaaaacaactaggaacgaggga |
99 |
Q |
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| T |
10304455 |
gtcattgcattgtttttccacaacacttattgacatggagtatgaataagaagctgaaaactacagcacgtttgcaaagaaaacaaataggaacaaggga |
10304356 |
T |
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| Q |
100 |
gtaaatctacagacactaa--ccagagttctaaactcatcttcggtgagatgaaaaa |
154 |
Q |
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| T |
10304355 |
ataaatttatagacactaactctagagttctaaactcatcctcagtgagatgaaaaa |
10304299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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