View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15986_low_4 (Length: 468)

Name: NF15986_low_4
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15986_low_4
NF15986_low_4
[»] chr3 (9 HSPs)
chr3 (82-242)||(5565257-5565417)
chr3 (251-384)||(5565170-5565302)
chr3 (168-284)||(31896518-31896633)
chr3 (286-366)||(14175288-14175364)
chr3 (168-284)||(31945875-31945990)
chr3 (150-195)||(13539573-13539618)
chr3 (168-284)||(31912227-31912342)
chr3 (322-359)||(13539487-13539524)
chr3 (168-284)||(31688234-31688349)
[»] chr8 (1 HSPs)
chr8 (325-422)||(43618600-43618697)
[»] chr7 (1 HSPs)
chr7 (322-374)||(7854246-7854298)
[»] chr4 (1 HSPs)
chr4 (321-382)||(31952902-31952963)
[»] scaffold0007 (1 HSPs)
scaffold0007 (273-351)||(257658-257735)
[»] chr2 (1 HSPs)
chr2 (16-49)||(274714-274747)
[»] scaffold0003 (1 HSPs)
scaffold0003 (168-267)||(42747-42845)
[»] chr6 (1 HSPs)
chr6 (168-267)||(27444516-27444614)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 5565417 - 5565257
Alignment:
Q  82 aaacaaagatcataatcaacgaatgattcagtattagaaatgaggaatacgaaaactgaaaataacaattaaccttgcaaaataaaagaagcttctgaca 181  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  5565417 aaacaaagatcaacatcaatgaatgattcagtattagaaatgaggaatacaaaagcagaaaataacaattaaccttgcaaaataaaagaagcttctgaca 5565318  T
Q  182 gcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactc 242  Q
    | |||  |||| || ||| ||||||||||| |||| ||| ||||| |||||||| ||||||    
T  5565317 gtgacatcgacacggtgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactc 5565257  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 251 - 384
Target Start/End: Complemental strand, 5565302 - 5565170
Alignment:
Q  251 tgaagagcaaattccgatgcgatggtcaacgatggtggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgat 350  Q
    |||||||| |||||||| ||  |||||||||| ||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||| ||||| ||    
T  5565302 tgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtgggtttt-gtagaggacgaagagattaagactat 5565204  T
Q  351 gatgcttttactttagtgggagaaggctaaaaaa 384  Q
    |||||||||||||||||||||||||||| |||||    
T  5565203 gatgcttttactttagtgggagaaggctgaaaaa 5565170  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 31896518 - 31896633
Alignment:
Q  168 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 267  Q
    |||||||||| |||||||| | |||||| ||| |||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||| |||||||    
T  31896518 agaagcttctaacagcgacactgacgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31896616  T
Q  268 tgcgatggtcaacgatg 284  Q
     ||| ||||||||||||    
T  31896617 cgcggtggtcaacgatg 31896633  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 14175288 - 14175364
Alignment:
Q  286 tggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgatgatgcttttactttag 366  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||| ||||| ||||||||   ||||||||||||||||    
T  14175288 tggtgcaactccggcgtggtggaaagcaaatggg-ttttgtagaggacgaagaaatgaagac---gatgcttttactttag 14175364  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 31945875 - 31945990
Alignment:
Q  168 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 267  Q
    |||||||||| |||||||| | | |||| ||| |||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||| |||||||    
T  31945875 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31945973  T
Q  268 tgcgatggtcaacgatg 284  Q
     ||| ||||||||||||    
T  31945974 cgcggtggtcaacgatg 31945990  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 13539618 - 13539573
Alignment:
Q  150 ttaaccttgcaaaataaaagaagcttctgacagcgaccccgacgcg 195  Q
    |||||||||||||||||||||||||||||||||| | |||||||||    
T  13539618 ttaaccttgcaaaataaaagaagcttctgacagcaaacccgacgcg 13539573  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 31912227 - 31912342
Alignment:
Q  168 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 267  Q
    |||||||||| |||||||| | | |||| ||| |||||||| || |||||||||| ||||| |||||| |||||| ||  || | ||||||| |||||||    
T  31912227 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcacggttaagagcatattccga 31912325  T
Q  268 tgcgatggtcaacgatg 284  Q
     ||| ||||||||||||    
T  31912326 cgcggtggtcaacgatg 31912342  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 13539524 - 13539487
Alignment:
Q  322 tttgtagaggatgaagagatgaagacgatgatgctttt 359  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  13539524 tttgcagaggatgaagagatgaagacaatgatgctttt 13539487  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 284
Target Start/End: Complemental strand, 31688349 - 31688234
Alignment:
Q  168 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 267  Q
    |||||||||| |||||||| | | |||| ||| |||||||| |  |||||||||| ||||| |||||| |||||| |  ||| | ||||||| |||| ||    
T  31688349 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ctgacgcggtgattaacaagggtggtgcaactccgacgcggttaagagcatattctga 31688251  T
Q  268 tgcgatggtcaacgatg 284  Q
     ||| ||||||||||||    
T  31688250 cgcggtggtcaacgatg 31688234  T

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Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 325 - 422
Target Start/End: Original strand, 43618600 - 43618697
Alignment:
Q  325 gtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaattaacgaaatgagggaataagaagaagagtttttgtgt 422  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||| ||||||||||    
T  43618600 gtagaagatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaagcaaatgagggcataagaagaagggtttttgtgt 43618697  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 7854298 - 7854246
Alignment:
Q  322 tttgtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 374  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7854298 tttgcagaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 7854246  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 31952902 - 31952963
Alignment:
Q  321 ttttgtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaa 382  Q
    |||||||||||||||||||||||||| |||||||  |||| ||||||||||| |||| ||||    
T  31952902 ttttgtagaggatgaagagatgaagatgatgatggctttattttagtgggaggaggccaaaa 31952963  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 351
Target Start/End: Complemental strand, 257735 - 257658
Alignment:
Q  273 tggtcaacgatggtggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgatg 351  Q
    ||||||||||  |||||  ||||||| ||||| ||||||||| |||||||| |||||||| ||||| ||||||||||||    
T  257735 tggtcaacgacagtggtttaactccggcgtggaggaaagcaaatgggtttt-gtagaggacgaagaaatgaagacgatg 257658  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 274747 - 274714
Alignment:
Q  16 caaggtgctggcaccagtaatggtaatatcttgt 49  Q
    ||||||||||||||||||||||||||||||||||    
T  274747 caaggtgctggcaccagtaatggtaatatcttgt 274714  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 267
Target Start/End: Original strand, 42747 - 42845
Alignment:
Q  168 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 267  Q
    |||||||||| |||||||| | |  ||| | | |||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||| |||||||    
T  42747 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 42845  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 267
Target Start/End: Complemental strand, 27444614 - 27444516
Alignment:
Q  168 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 267  Q
    |||||||||| |||||||| | |  ||| | | |||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||| |||||||    
T  27444614 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 27444516  T

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