View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_42 (Length: 250)
Name: NF15986_low_42
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_42 |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 79 - 233
Target Start/End: Original strand, 29894462 - 29894616
Alignment:
| Q |
79 |
tcatcctcaacgccgacacccgactgcatctatcatgactccgacaacgctggtggttctccccgatgatctcatcgtcaagatactttccttccttccg |
178 |
Q |
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| T |
29894462 |
tcatcctcgacgccaacacccgactgcatctatcatgattccgacaaagctggtggttctccctgacgatctcatcttcaagatactttccttacttccg |
29894561 |
T |
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| Q |
179 |
gttatatctcttgttcgattcagttgtgttaacaagtcttggaaaaccataatct |
233 |
Q |
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| T |
29894562 |
gttatatctcttgttcgattcacttgtgttagcaagtcttggaaaaccctaatct |
29894616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 29477404 - 29477233
Alignment:
| Q |
70 |
atttaggtttcatcctcaacgccgacacccgactgcatct-----atcatgactccgacaacgctggtggttctccccgatgatctcatcgtcaagatac |
164 |
Q |
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| T |
29477404 |
attttggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtggtccttcctgacgatctcatcgcagagttac |
29477305 |
T |
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| Q |
165 |
tttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaaccataatctctg |
236 |
Q |
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| T |
29477304 |
tttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccctaatctctg |
29477233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 29105894 - 29105989
Alignment:
| Q |
130 |
ggtggttctccccgatgatctcatcgtcaagatactttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaac |
225 |
Q |
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| T |
29105894 |
ggtggttctccccgatgatctcatcgcagaagttctttccttccttcccgttatatttcttcttcgatttaggtctgtcagcaagtcttggaaaac |
29105989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 29894413 - 29894465
Alignment:
| Q |
16 |
cagtgactgcaacgatgacaaggagac--ggtgaagggttggatttttctcat |
66 |
Q |
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| T |
29894413 |
cagtgactgcaaggatgacaaggagacgtggtaaagggttggatttttctcat |
29894465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 29446615 - 29446532
Alignment:
| Q |
143 |
gatgatctcatcgtcaagatactttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaacc |
226 |
Q |
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| T |
29446615 |
gatgatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacc |
29446532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 14755 - 14584
Alignment:
| Q |
70 |
atttaggtttcatcctcaacgccgacacccgactgcatct-----atcatgactccgacaacgctggtggttctccccgatgatctcatcgtcaagatac |
164 |
Q |
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| T |
14755 |
atttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtgttccttccgggcgatctcatcgcagagttac |
14656 |
T |
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| Q |
165 |
tttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaaccataatctctg |
236 |
Q |
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| T |
14655 |
tttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctg |
14584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 23590 - 23419
Alignment:
| Q |
70 |
atttaggtttcatcctcaacgccgacacccgactgcatct-----atcatgactccgacaacgctggtggttctccccgatgatctcatcgtcaagatac |
164 |
Q |
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| T |
23590 |
atttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtgttccttccgggcgatctcatcgcagagttac |
23491 |
T |
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| Q |
165 |
tttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaaccataatctctg |
236 |
Q |
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| T |
23490 |
tttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctg |
23419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 4015861 - 4015767
Alignment:
| Q |
137 |
ctccccgatgatctcatcgtcaagatactttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaaccataat |
231 |
Q |
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| T |
4015861 |
ctccccgacgaactcatctttgaggtactttcatttcttccagtgagatctcttgttcgattcaggtgtgtgagtaagtcttggaaaaccctaat |
4015767 |
T |
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