View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_44 (Length: 244)
Name: NF15986_low_44
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_44 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14340159 - 14339928
Alignment:
| Q |
1 |
atagcaaacaaagacaaacattgtatccaaaaccctcggcatcaacaccctccaaaaccaccgacgcaagtattctctaaggttccaacaccattcttaa |
100 |
Q |
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| T |
14340159 |
atagcaaacaaagacaaacattgtatccaaaaccctcagcatcaacaccctccaaaaccaccgacgcaagtattctctaaggttccaacaccattcttaa |
14340060 |
T |
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| Q |
101 |
aataagcaggacaagatttttaatctattcaaactccaataccacgagactaccttaatttcctccaccatttcgtcaacctcctttatcttgttaaaaa |
200 |
Q |
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| T |
14340059 |
aataaacaggacaagatttttaacctattcaaactccaataccacaagactaccttaatttcctccaccatttcgacaacctcctttaccttgttaaaaa |
14339960 |
T |
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| Q |
201 |
tcctattattacatgacaatagtgaagaagat |
232 |
Q |
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| T |
14339959 |
tcctattattacatgataatagtgaagaagat |
14339928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 7898522 - 7898419
Alignment:
| Q |
83 |
ttccaacaccattcttaaaataagcaggacaagatttttaatctattcaaactccaataccacgagactaccttaatttcctccaccatttcgtcaacct |
182 |
Q |
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|||||||||||||| ||||||||||| || ||||||| | ||||||||||||||||| |||| ||| ||| ||||| ||||| |||||||| ||||||| |
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| T |
7898522 |
ttccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagagtactttaatctcctcaaccatttcatcaacct |
7898423 |
T |
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| Q |
183 |
cctt |
186 |
Q |
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|||| |
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| T |
7898422 |
cctt |
7898419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 19815933 - 19815995
Alignment:
| Q |
122 |
aatctattcaaactccaataccacgagactaccttaatttcctccaccatttcgtcaacctcc |
184 |
Q |
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| T |
19815933 |
aatctattcatactccaatgccacgagaccaccttgatttgttccaccatttcatccacctcc |
19815995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 81110 - 81061
Alignment:
| Q |
134 |
ctccaataccacgagactaccttaatttcctccaccatttcgtcaacctc |
183 |
Q |
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| T |
81110 |
ctccaatgccatgagaccaccttaatttgctccaccatttcgtccacctc |
81061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 12176962 - 12176934
Alignment:
| Q |
116 |
atttttaatctattcaaactccaatacca |
144 |
Q |
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| T |
12176962 |
atttttaatctattcaaactccaatacca |
12176934 |
T |
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