View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_5 (Length: 467)
Name: NF15986_low_5
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Original strand, 53097336 - 53097768
Alignment:
| Q |
14 |
aggcacaccctgcagatttaattttggagcagtgctttgagttgccaccaaattatctgcactcccagttaaatcattgtcatcaacatcaatggtttca |
113 |
Q |
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| T |
53097336 |
aggcacaccctgcagatttacttttggagcagtgatttgagttgccaccaaattatctgcactcccagttaaatcattgtcatcaacatcaatggtttca |
53097435 |
T |
|
| Q |
114 |
cttgaactaatttttgctgctcccatagacgaactttcaggaataagattagtatcttcaacagcttctgaggctaaaacacatgacaaatnnnnnnnnn |
213 |
Q |
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| T |
53097436 |
cttgaactaatttttgctgctcccatagacgaactttcaggaataagattagtatcttcaacagcttctgaggctaaaacacatgacaaat-aaaaaaaa |
53097534 |
T |
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| Q |
214 |
ttaatcagaaattcataaaacagtaattattattattaactaaataactaatgaaagcaatgtgat--aaagaataaataaccttgaaaagtagcattag |
311 |
Q |
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| T |
53097535 |
ttaatcagaaattcataaaacagtaattattattattaattaaataactaatgaaagcaatgtgatagagagaataaataaccttgaaaagtagcattag |
53097634 |
T |
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| Q |
312 |
tactctcctcttgttcctgagaaaccgaattcttcattaacgattcacggtatacttcattgtcagcattagtaccacaattggtaggaaacattccagc |
411 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53097635 |
tactctcctct------tgagaaaccgaattcttcagtaacgattcacggtatacttcattgtcagcattagtaccacaactggtaggaaacattccagc |
53097728 |
T |
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| Q |
412 |
caaagcatagagtgtctctgcaacctcttgctcatctttt |
451 |
Q |
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| T |
53097729 |
caaagcatagagtgtctctgcaacctcttgctcatctttt |
53097768 |
T |
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