View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_56 (Length: 214)
Name: NF15986_low_56
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 42760849 - 42761030
Alignment:
| Q |
14 |
caaaggctgtccaattttaatgtcaggaactgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaac |
113 |
Q |
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| T |
42760849 |
caaaggctgtccaattttaatgtcaggaactgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaagatcttccatagaac |
42760948 |
T |
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| Q |
114 |
aatttaagttgggaactgttgtatccatgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccag |
195 |
Q |
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| T |
42760949 |
aatttaagttgggagctgttgtatccacgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccag |
42761030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 42742028 - 42742207
Alignment:
| Q |
14 |
caaaggctgtccaattttaatgtcaggaactgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaac |
113 |
Q |
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| T |
42742028 |
caaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaac |
42742127 |
T |
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| Q |
114 |
aatttaagttgggaactgttgtatccatgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtcc |
193 |
Q |
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| T |
42742128 |
aatttaagttgggagctgttgtatccacgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtcc |
42742207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 42751387 - 42751568
Alignment:
| Q |
14 |
caaaggctgtccaattttaatgtcaggaactgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaac |
113 |
Q |
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| T |
42751387 |
caaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaac |
42751486 |
T |
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| Q |
114 |
aatttaagttgggaactgttgtatccatgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccag |
195 |
Q |
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| T |
42751487 |
aatttaagttgcgagctgttgtatccacgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccag |
42751568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 42736656 - 42736482
Alignment:
| Q |
21 |
tgtccaattttaatgtcaggaactgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaacaatttaa |
120 |
Q |
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| T |
42736656 |
tgtccaattttaaagtcaggaattgtgatggctggataattgaaatctattatattgaaagattttggacaagtataaggtcttccgtagaacagtttaa |
42736557 |
T |
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| Q |
121 |
gttgggaactgttgtatccatgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccag |
195 |
Q |
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| T |
42736556 |
gttgtttattgttgtatccacgagcacataaaaagttcaaataatcaataacatttaggtcatatacaagtccag |
42736482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 42715141 - 42715292
Alignment:
| Q |
44 |
tgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaacaatttaagttgggaactgttgtatccatga |
143 |
Q |
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| T |
42715141 |
tgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagtgtagggcttgccatagaaaaacctaagcatggaactattgtagccacga |
42715240 |
T |
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| Q |
144 |
ccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccag |
195 |
Q |
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| T |
42715241 |
gcgcacaaaaagttcatatagtcagtaatatttaggtcatatacaagtccag |
42715292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 23042471 - 23042290
Alignment:
| Q |
14 |
caaaggctgtccaattttaatgtcaggaactgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaac |
113 |
Q |
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| T |
23042471 |
caaaggctgtccaattttaaagttcggaactatgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaac |
23042372 |
T |
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| Q |
114 |
aatttaagttgggaactgttgtatccatgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccag |
195 |
Q |
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| T |
23042371 |
aatttaagttgggagttgttgtatccatgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccag |
23042290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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