View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15986_low_6 (Length: 467)
Name: NF15986_low_6
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_6 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0054 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Complemental strand, 34461942 - 34461492
Alignment:
| Q |
17 |
cactggaatcatagcaacagaacacaagaaaaccaagacaggtccaaagatccaaagcaaaagaggaaatgcagaatagaaaagtctatttccaacagtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34461942 |
cactggaatcatagcaacagaacacaagaaaaccaagacaggtccaaagatccaaagcaaaagaggaaatgcagaatagaaaagtctatttccaacagtg |
34461843 |
T |
|
| Q |
117 |
ctcaaaacaattcctttgtccaaaagctcagacaaatattcaggtgtgatgacagcataggacaagacatcttgtggtgtgcaaatgaggatgcttactt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34461842 |
ctcaaaacaattcctttgtccaaaagctcagacaaatattcaggtgtgatgacagcataggacaagacatcttgtggtgtgcaaatgaggatgcttactt |
34461743 |
T |
|
| Q |
217 |
ggttgaaaaacctaatggacaatgtgtgacagaaaaatgagaataagaatatagttaggagtgtgacatattttagggctaccataaattcactatgagc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34461742 |
ggttgaaaaacctaatggacaatgtgtgacagaaaaatgagaataagaatatagttaggagtgtgacatattttagggctaccataaattcactatgagc |
34461643 |
T |
|
| Q |
317 |
tccataaatggaatcattgagaggcttcttcacactgtatgtgctgcttatcactgctgctaaaccagctgagagaagaatggatgtagttgccataagt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34461642 |
tccataaatggaatcattgagaggcttcttcacactgtatgtgctgcttatcactgctgccaaaccagctgagagaagaatggatgtagttgccataagt |
34461543 |
T |
|
| Q |
417 |
gttgatcccattattaggttacgtagtgtttgaactgctaggatgttcttc |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34461542 |
gttgatcccattattaggttacgtagtgtttgaactgctaggatgttcttc |
34461492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 378
Target Start/End: Original strand, 1149722 - 1149848
Alignment:
| Q |
252 |
aatgagaataagaatatagttaggagtgtgacatattttagggctaccataaattcactatgagctccataaatggaatcattgagaggcttcttcacac |
351 |
Q |
| |
|
|||||||| | ||| || || ||||||| |||||||||||| || ||||| ||||||| ||| ||||||||||| | |||||| || ||||| ||||||| |
|
|
| T |
1149722 |
aatgagaagaggaaaattgtgaggagtgagacatattttagtgcaaccatgaattcaccatgtgctccataaattgcatcatttagtggctttttcacac |
1149821 |
T |
|
| Q |
352 |
tgtatgtgctgcttatcactgctgcta |
378 |
Q |
| |
|
| |||||||||||||| |||||||||| |
|
|
| T |
1149822 |
tatatgtgctgcttataactgctgcta |
1149848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 1149498 - 1149591
Alignment:
| Q |
21 |
ggaatcatagcaacagaacacaagaaaaccaagacaggtccaaagatccaaagcaaaagaggaaatgcagaatagaaaagtctatttccaacag |
114 |
Q |
| |
|
|||| |||||||| ||| || | |||||||| ||||| ||||| ||||| ||||| | ||||| | ||| ||||||||| ||||||||||||| |
|
|
| T |
1149498 |
ggaaccatagcaagagagcaaaggaaaaccataacaggaccaaaaatccatagcaacaaaggaagtccagcatagaaaagcctatttccaacag |
1149591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 184 - 430
Target Start/End: Complemental strand, 21761 - 21515
Alignment:
| Q |
184 |
catcttgtggtgtgcaaatgaggatgcttacttggttgaaaaacctaatggacaatgtgtgacagaaaaatgagaataagaatatagttaggagtgtgac |
283 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||||| ||||||||| || | ||||| ||||||||||||||||||||||| || || ||||| || |
|
|
| T |
21761 |
catcttgtggtgtgcaaataaggaggcttaattggttgagaaacctaattgaaagagtgtggcagaaaaatgagaataagaatatggtaagaagtgtcac |
21662 |
T |
|
| Q |
284 |
atattttagggctaccataaattcactatgagctccataaatggaatcattgagaggcttcttcacactgtatgtgctgcttatcactgctgctaaacca |
383 |
Q |
| |
|
||||||||||||| |||||||||| | ||||| ||||| | ||| | |||||||| |||||||| || || |||||||| | || ||||| ||| |
|
|
| T |
21661 |
atattttagggcttccataaattcgccgtgagcgccatagagaacatcgtcaagaggctttttcacactataagtactgcttatgatagcggctaagcca |
21562 |
T |
|
| Q |
384 |
gctgagagaagaatggatgtagttgccataagtgttgatcccattat |
430 |
Q |
| |
|
||||| | || || |||||||| ||||||||||||||||||||||| |
|
|
| T |
21561 |
gctgataagaggattgatgtagtggccataagtgttgatcccattat |
21515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 21913 - 21817
Alignment:
| Q |
26 |
catagcaacagaacacaagaaaaccaagacaggtccaaagatccaaagcaaaagaggaaatgcagaatagaaaagtctatttccaacagtgctcaaa |
122 |
Q |
| |
|
|||||| | ||| ||||| ||||||||||| || ||||| |||||||||||||| |||| ||||| ||||||| ||||| || |||||| ||||| |
|
|
| T |
21913 |
catagccaaagagcacaataaaaccaagactggaccaaatatccaaagcaaaagtggaagagcagagtagaaaatcctattccccacagtgttcaaa |
21817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 442
Target Start/End: Complemental strand, 24451035 - 24450941
Alignment:
| Q |
348 |
acactgtatgtgctgcttatcactgctgctaaaccagctgagagaagaatggatgtagttgccataagtgttgatcccattattaggttacgtag |
442 |
Q |
| |
|
||||| || ||||| ||||| | |||| |||||||||| | || ||||||||||| |||| ||| || |||| ||||||||||| ||||||||| |
|
|
| T |
24451035 |
acactataagtgctacttataattgctcctaaaccagcacataggagaatggatgttgttgacattagggttgttcccattattaagttacgtag |
24450941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University