View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15986_low_7 (Length: 467)
Name: NF15986_low_7
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 10 - 450
Target Start/End: Complemental strand, 48959402 - 48958962
Alignment:
| Q |
10 |
atcaaattaacaatattaactacagtatatttaaaccaaggttgaacttgaagagagacatacaatagagagaatttataagcaatggaaggtgttgaag |
109 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48959402 |
atcaaataatcaatattaactacagtatatttaaaccaaggttgaacttgaagagagacatacaatagagagaatttataagcaatggaaggtgttgaag |
48959303 |
T |
|
| Q |
110 |
ttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgtttgcatcccttggccaaca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48959302 |
ttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgtttgcatcccatggccaaca |
48959203 |
T |
|
| Q |
210 |
agtgacaatcatcaccactccctccaactcccacttctttaccaaatctctctcaagtgttgatcccttcttcctccgccttcaccttgtcaactttccc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48959202 |
agtgacaatcatcaccactccctccaactcccacttctttaccaaatctctctcaagtgttgatcccttcttcctccgccttcaccttgtcaactttccc |
48959103 |
T |
|
| Q |
310 |
tcccaacaagttggcctccctgacggcgttgaatctatgtcctccacctccgacagtgacaccaccggcaagatatactacggggcaatgctccttcgtg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48959102 |
tcccaacaagttggcctccctgacggcgttgaatctatgtcctccacctccgacggtgacacctccggcaagatatactacggggcaatgctcctccgtg |
48959003 |
T |
|
| Q |
410 |
aacctattcacgatttcatggagaaggatccacctgactgc |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48959002 |
aacctattcacgatttcatggagaaggatccacctgactgc |
48958962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 73 - 450
Target Start/End: Complemental strand, 48963482 - 48963103
Alignment:
| Q |
73 |
aatagagagaatttataagcaa-tggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatg |
171 |
Q |
| |
|
||||||||||||| |||| || |||| || ||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||| || || |
|
|
| T |
48963482 |
aatagagagaattgataaaaaaatggagggcgttgaagttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttg |
48963383 |
T |
|
| Q |
172 |
tgtgacatagcaactctgtttgcatcccttggccaacaagtgacaatcatcaccactccctccaactcccacttctttacc---aaatctctctcaagtg |
268 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||| || |||| || || |
|
|
| T |
48963382 |
ggtgacatagcagctctgtttgcgtcccgtggccaacaagtcacaatcatcaccactccctccaacgcccacttcttcaccaataagtctccttcctttg |
48963283 |
T |
|
| Q |
269 |
ttgatcccttcttcctccgccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacctccgacagtga |
368 |
Q |
| |
|
|||||| ||||||| |||||||| || |||| |||||| ||||| |||||| ||| || ||||||||| ||||||||||| | |||| | |
|
|
| T |
48963282 |
ccgatcccctcttccttcgccttcataccatcgacttcccctccaaacaa--cagcctccttgatggtgttgaatctttgtcctccaccactgacatcgc |
48963185 |
T |
|
| Q |
369 |
caccaccggcaagatatactacggggcaatgctccttcgtgaacctattcacgatttcatggagaaggatccacctgactgc |
450 |
Q |
| |
|
|||| | | ||||||||||||||| ||||||||||| | | ||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48963184 |
cacctcagccaagatatactacggcgcaatgctcctccacggaccaattcaggatttcatggagaaggatccacctgactgc |
48963103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 92 - 260
Target Start/End: Complemental strand, 48966508 - 48966340
Alignment:
| Q |
92 |
caatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgtt |
191 |
Q |
| |
|
||||||||||||||||| || | |||| |||||||||||||||||||||||| |||||| || ||||||||||| |||||||||||||||||| | || |
|
|
| T |
48966508 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactatctt |
48966409 |
T |
|
| Q |
192 |
tgcatcccttggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctct |
260 |
Q |
| |
|
|||||| | |||||||||||| || |||||||| |||||||| ||| || ||||| || |||||||||| |
|
|
| T |
48966408 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctct |
48966340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 82 - 357
Target Start/End: Complemental strand, 13441389 - 13441114
Alignment:
| Q |
82 |
aatttataagcaatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatag |
181 |
Q |
| |
|
||||||| | ||||||||||||||||||| || |||| ||||| |||||||||||||||||| |||| |||| ||||||||||| | |||||||||| |
|
|
| T |
13441389 |
aatttatcaacaatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatag |
13441290 |
T |
|
| Q |
182 |
caactctgtttgcatcccttggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctctctcaagtgttgatcccttctt |
281 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| | || | | | ||||||||||||||| | | | ||||||| |
|
|
| T |
13441289 |
caactatgtttgcatcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctctcatccgcggcttccttctt |
13441190 |
T |
|
| Q |
282 |
cctccgccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacc |
357 |
Q |
| |
|
||||||| | ||| ||| ||||||||||||||||||| | ||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
13441189 |
cctccgcttccacaccgtcgactttccctcccaacaagtcgacctccctgaaggcattgaatctatgtcttccacc |
13441114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 90 - 363
Target Start/End: Complemental strand, 13462565 - 13462292
Alignment:
| Q |
90 |
agcaatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctg |
189 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||| |||||||||||||||| |||| |||| ||||||||||| | | ||||||||||| | || |
|
|
| T |
13462565 |
agcaatggaaggtgtagaagttgaacaaccactgaaactgcacttcattccatatctagcatctggacatatgatccctctttttgacatagcaattatg |
13462466 |
T |
|
| Q |
190 |
tttgcatcccttggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctctctcaagtgttgatcccttcttcctccgcc |
289 |
Q |
| |
|
|||||||||| ||||||||| || ||| |||||||||||||||||||| ||| | | ||||||||||||||||| | | ||||| | |||| ||| |
|
|
| T |
13462465 |
tttgcatcccgtggccaacacgtcacagtcatcaccactccctccaacgtccaatcccttaccaaatctctctcatccgccgctccctccctccttcgct |
13462366 |
T |
|
| Q |
290 |
ttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacctccgac |
363 |
Q |
| |
|
||||| || | || |||||||||||||||||||| ||||| ||| ||||||||||||| |||||| ||||| |
|
|
| T |
13462365 |
ttcacaccatcgaattcccctcccaacaagttggccttcctgatggcattgaatctatgtcttccaccaccgac |
13462292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 350
Target Start/End: Complemental strand, 13449547 - 13449284
Alignment:
| Q |
87 |
ataagcaatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaact |
186 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| || |||||||||||| || ||| |||| ||||||||||| | | ||||||||||||| |
|
|
| T |
13449547 |
ataagcaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttcttgcatctggacatatgatccctctttttgacatagcaact |
13449448 |
T |
|
| Q |
187 |
ctgtttgcatcccttggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctctctcaagtgttgatcccttcttcctcc |
286 |
Q |
| |
|
|||||||||||| |||||| ||||| ||| |||||||||||||| ||||| | | | | ||||||||||||||||| | | ||| | ||||| | |
|
|
| T |
13449447 |
atgtttgcatcccgtggccagcaagtaacagtcatcaccactcccgccaacgcaaaatcccttaccaaatctctctcatccgacgctccttcattccttc |
13449348 |
T |
|
| Q |
287 |
gccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtc |
350 |
Q |
| |
|
| |||||| || |||| |||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
13449347 |
gtcttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtc |
13449284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 137 - 448
Target Start/End: Original strand, 12640532 - 12640843
Alignment:
| Q |
137 |
ttccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgtttgcatcccttggccaacaagtgacaatcatcaccactccctccaa |
236 |
Q |
| |
|
|||||| || ||||||||| |||||||| || || ||||||||||| || |||||||||||| |||||||||||| || |||||||||||||||||||| |
|
|
| T |
12640532 |
ttccatttctagcacctggtcatatgattcctttgggtgacatagcagctttgtttgcatcccatggccaacaagtcacgatcatcaccactccctccaa |
12640631 |
T |
|
| Q |
237 |
ctcccacttctttaccaaatctctctcaagtgttgatcccttcttcctccgccttcaccttgtcaactttccctcccaacaagttggcctccctgacggc |
336 |
Q |
| |
|
| |||| |||||||||||||||||||| || ||||| || ||||||||||||||| ||| |||| |||||||||||||| | || || |||||| |
|
|
| T |
12640632 |
cgcccatttctttaccaaatctctctccttcgtcgatccgtttttcctccgccttcacaccgtcgacttcccctcccaacaagtcgatcttcccgacggc |
12640731 |
T |
|
| Q |
337 |
gttgaatctatgtcctccacctccgacagtgacaccaccggcaagatatactacggggcaatgctccttcgtgaacctattcacgatttcatggagaagg |
436 |
Q |
| |
|
|||||||| ||||||||||| | || |||||||| | |||||||| | || ||||||||||| | |||||| ||| || ||| ||||||||| |
|
|
| T |
12640732 |
gttgaatcattgtcctccaccactaaccctgacaccatggccaagatatgtaaaggtgcaatgctcctccatgaacccattagagaattcgtggagaagg |
12640831 |
T |
|
| Q |
437 |
atccacctgact |
448 |
Q |
| |
|
||| |||||||| |
|
|
| T |
12640832 |
atcaacctgact |
12640843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 92 - 254
Target Start/End: Original strand, 12482461 - 12482623
Alignment:
| Q |
92 |
caatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgtt |
191 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| | || ||||||||||| |
|
|
| T |
12482461 |
caatggaaggtgttgaagttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgatccctatgtgcaagattgcaactctgtt |
12482560 |
T |
|
| Q |
192 |
tgcatcccttggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaa |
254 |
Q |
| |
|
|||||| | |||||| || || ||||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
12482561 |
tgcatcacgtggccatcatgtcacaatcatcaccactccttccaacacccacttcttcaccaa |
12482623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 12589177 - 12589355
Alignment:
| Q |
76 |
agagagaatttataagcaatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtg |
175 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||| |||| ||| | |||||||||||||||||||||| | ||||||||||||||||||| | |||| |
|
|
| T |
12589177 |
agagagaattgataagcaatgaaaggcgttgaaattgaacaaccattaaaacttcacttcattccatatctatcacctgggcatatgatccctctatgtg |
12589276 |
T |
|
| Q |
176 |
acatagcaactctgtttgcatcccttggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaa |
254 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
12589277 |
acattgcaaccctgtttgcatcccgtggccaacaagtcacaatcaccaccactcccttgaactcccacttcttcaccaa |
12589355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 12589393 - 12589449
Alignment:
| Q |
307 |
ccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacctccgac |
363 |
Q |
| |
|
||||||| |||||| |||||||||||||| || |||||| ||||||||||| ||||| |
|
|
| T |
12589393 |
ccctccctacaagtcggcctccctgacggtgtcgaatctttgtcctccaccaccgac |
12589449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 12541851 - 12541708
Alignment:
| Q |
93 |
aatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgttt |
192 |
Q |
| |
|
|||||||||||||||||||||| |||| | ||| ||||||||||||||||| |||| |||| ||||||||||| | ||||| ||||||||| ||||| |
|
|
| T |
12541851 |
aatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgttt |
12541752 |
T |
|
| Q |
193 |
gcatcccttggccaacaagtgacaatcatcaccactccctccaa |
236 |
Q |
| |
|
||||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12541751 |
gcatcacatggccaacaagtcacaatcatcaccactccctccaa |
12541708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 28386512 - 28386363
Alignment:
| Q |
87 |
ataagcaatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaact |
186 |
Q |
| |
|
||||| |||| | |||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||| |||||||| || | ||||| ||||||||| |
|
|
| T |
28386512 |
ataagaaatgaatggtgttgaagttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatgatgccactttgtgatatagcaact |
28386413 |
T |
|
| Q |
187 |
ctgtttgcatcccttggccaacaagtgacaatcatcaccactccctccaa |
236 |
Q |
| |
|
|||||||||| | ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
28386412 |
ttgtttgcatcacgtggccaacatgtcacaatcatcaccactccctccaa |
28386363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 12541668 - 12541599
Alignment:
| Q |
288 |
ccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacc |
357 |
Q |
| |
|
||||||| |||| |||| |||||| ||||||| | ||||||| | ||| |||||||||||||||||||| |
|
|
| T |
12541668 |
ccttcacactgtcgacttcccctccgaacaagtcgacctccctaaaggcattgaatctatgtcctccacc |
12541599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 90 - 363
Target Start/End: Original strand, 3416534 - 3416807
Alignment:
| Q |
90 |
agcaatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctg |
189 |
Q |
| |
|
|||||||| |||||||||||| || |||| ||||| ||||||||||||| |||| ||| || | ||||||||||| | | ||| |||||| || || |
|
|
| T |
3416534 |
agcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatcttgcatctagccatatgatccctctttctgatatagcagctatg |
3416633 |
T |
|
| Q |
190 |
tttgcatcccttggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctctctcaagtgttgatcccttcttcctccgcc |
289 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||||||||||||| || | || |||| |||||||| || || | ||||||||||||||||| |
|
|
| T |
3416634 |
tttgcatcccatggccaacatgtcacaatcatcaccactccctccaatgccaaatttcttacaaaatctctttcttatgccgctcccttcttcctccgcc |
3416733 |
T |
|
| Q |
290 |
ttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacctccgac |
363 |
Q |
| |
|
||||| ||| ||||||||| |||||| | | ||||||||| ||| |||||||||| ||||||||| ||||| |
|
|
| T |
3416734 |
ttcacaccgtcgactttccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccaccgac |
3416807 |
T |
|
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