View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15986_low_8 (Length: 433)
Name: NF15986_low_8
Description: NF15986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15986_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 6389111 - 6389552
Alignment:
| Q |
1 |
tcttttaaatgactctttgattttgcatgaacatcttggtataaggtacaattttgggaagcttgaatggtttatgtttgaattaagttactaggaaatt |
100 |
Q |
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| T |
6389111 |
tcttttaaatgactctttgattttgcatgaacatcttggtataaggtataattttgggaagcttgaatggtttatgtttgaattaagttacttggaaatt |
6389210 |
T |
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| Q |
101 |
tattttgattgtttagatagcatataaacaatctgccgttgaagtgaaaaaccgttggaaatatctatatttggaattttatcagtgatggtttttgtcc |
200 |
Q |
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| T |
6389211 |
tattttgattgtttagatagcatataaacaatctgccgttgaagtgaaaaaccgttggaaatgtctatatttggaattttatcagtgatggtttttgtcc |
6389310 |
T |
|
| Q |
201 |
attcaatgattccttcagttctattcttgtttttgtctactg--agt-------------------aatgagttttcactagagctcgttaatatttggt |
279 |
Q |
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| T |
6389311 |
attcaatgattccttcagttctattcttgtttttgtctactgaaagtaatgagttcatttcacaaaaatgagttttcactagagctcattaatatttggt |
6389410 |
T |
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| Q |
280 |
atgaaggattatttcaaagtcatgttttaattttctgtcgtgggttctatattatgtttgctgcaacatagaaataatgcagtccacagactaatttgct |
379 |
Q |
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| T |
6389411 |
atgaaggattatttcaaagtcatgttttaattttctgtcgtgggttctatattatgtttgctgcaacatagaaataatgcagtccacagactaatttgct |
6389510 |
T |
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| Q |
380 |
gga-nnnnnnngaagcaattttgcaggatttgttttcttctc |
420 |
Q |
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| T |
6389511 |
ggattttttttgaagcaattttgcaggatttgttttcttctc |
6389552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 10552269 - 10552204
Alignment:
| Q |
268 |
ttaatatttggtatgaaggattatttcaaagtcatgttttaattttctgtcgtgggttctatatta |
333 |
Q |
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| T |
10552269 |
ttaatatatggtataaaggattatttcaaaatcacgttttgattttcaattgtgggttctatatta |
10552204 |
T |
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