View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15987_high_1 (Length: 610)
Name: NF15987_high_1
Description: NF15987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15987_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 28121650 - 28121336
Alignment:
| Q |
20 |
gcatagaaaaatagtaaactaagcaaactatatcaatgaaaatcaattgagtaatcctaattatgactaatcatcaaaaacaatcaatagtggggaatat |
119 |
Q |
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| T |
28121650 |
gcatagaaaaataggaaactaagcaaactatatcaacgaaaatcaattgagtaatcctaattatgactaatcataaaaaacaatcaatagtggggaatat |
28121551 |
T |
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| Q |
120 |
tggatttgtcataaatcttaagagattcttgggaattaggtttaagggg--cttaataaaaaatggcaaaactgctccatctgttccttaaattaactta |
217 |
Q |
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| T |
28121550 |
tggatttgtcataaatcttaagagattcttgggaattaggtttaaggggggcttaataaaaaacggcaaaattgctccatcggttccttaaattaactta |
28121451 |
T |
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| Q |
218 |
atgatttgacatttatcttttttaatcctatgtggccattacaaagaaaagaaaacaaaacattgctgatgtgttattttagtcatcatgtggcaaatcc |
317 |
Q |
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| T |
28121450 |
atgatttgacatttatcttttttaatcctatgtggccattacaaagaaaacaaaacaaaacattgctgatgtgttattttagtcatcatgtggcaaatcc |
28121351 |
T |
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| Q |
318 |
aagtaggtatttagc |
332 |
Q |
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| T |
28121350 |
aagtaggtatttagc |
28121336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 430 - 593
Target Start/End: Complemental strand, 28121237 - 28121074
Alignment:
| Q |
430 |
ctttgagtggtgatggagaagatgaacccaaatttaaattgattggttatgaaaaattgatatgcatatctctaaagagtatgtttatttgttttagatg |
529 |
Q |
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| T |
28121237 |
ctttgagtggtgatggagaagatgaacccaaatttaaattgattggttatgaaaaattgatatgcatatttctaaagagtatgtttatttgttttagatg |
28121138 |
T |
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| Q |
530 |
tcctttttaatgactatggtagtcaatagcctggttcaaaactcaaatccatatgtcacatctg |
593 |
Q |
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| T |
28121137 |
tcctttttaatgactatggtagtcaatagcctggttcaaaactcaaatccatatgtcacatctg |
28121074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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