View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15987_high_4 (Length: 356)
Name: NF15987_high_4
Description: NF15987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15987_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 40581003 - 40581195
Alignment:
| Q |
18 |
taaaccctaagataaaaatagtagtaagaatatcaaaattcaatacgaaatacaaacttaatatatgtctgagactcatttgaccacttagaatgacaac |
117 |
Q |
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| T |
40581003 |
taaaacctaagataaaa-tagtagtaagaatatcaaaattcaatacgaaatacaaacttaatatatgtctgagactcatttgaccacttagaatgacaac |
40581101 |
T |
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| Q |
118 |
cgacatattgccatttcaagatgataaaacttagaagcaaaatatgttgatttaactcctgtgctaattaataagattacaattatgatgcaag |
211 |
Q |
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| T |
40581102 |
cgacatattgccatttcaagatgataaaacttagaagcaaaatatgttgatttaactcctgtgctaattaataagattacaattatgatgcaag |
40581195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 40581286 - 40581341
Alignment:
| Q |
301 |
tcatctaggtctcgcatgaccaacaagtcgatatgtgcatcttaaattttacggac |
356 |
Q |
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| T |
40581286 |
tcatctaggtctcgcatgaccaacaagtcgatatgtgcatcttaaattttacggac |
40581341 |
T |
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