View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15987_low_2 (Length: 430)

Name: NF15987_low_2
Description: NF15987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15987_low_2
NF15987_low_2
[»] chr4 (3 HSPs)
chr4 (13-272)||(55268761-55269018)
chr4 (272-407)||(55269054-55269189)
chr4 (272-407)||(55262349-55262489)
[»] chr2 (2 HSPs)
chr2 (13-88)||(29952537-29952612)
chr2 (13-89)||(25592353-25592429)
[»] chr6 (2 HSPs)
chr6 (40-92)||(25950296-25950348)
chr6 (52-92)||(25785490-25785530)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 55268761 - 55269018
Alignment:
Q  13 agaagaagaaacacacacaaaaacaaaaacgatatggttgaggaacgcactcctagagagtatgcaaccccatctacggagcagaggagtacccccatcg 112  Q
    ||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  55268761 agaagaagaaacac--acaaaaacaaaaacgatatggctgaggaacgcactcctagagagtatgcaaccccatctaagaagcagaggagtacccccatcg 55268858  T
Q  113 accccgttgacatccttaggtgttgtttggaatttgcatagtacctccaatgttgtttttaatccgtttaattactcactcacacttgaactaaaataag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55268859 accccgttgacatccttaggtgttgtttggaatttgcatagtacctccaatgttgtttttaatccgtttaattactcactcacacttgaactaaaataag 55268958  T
Q  213 tgggagttattagttcaacttcaattataaatggattaaatgaatgatttatagtatgta 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55268959 tgggagttattagttcaacttcaattataaatggattaaatgaatgatttatagtatgta 55269018  T

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Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 272 - 407
Target Start/End: Original strand, 55269054 - 55269189
Alignment:
Q  272 atataaaatagaagtaatggattatagttgctttcgtctcattcctccaaatttggatgagatgtggttccattgctaaaagaaactcactatgtgacag 371  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  55269054 atataaaatagaagtaatggattatggttgctttcgtctcattcctccaaattgggatgagatgtggttccattgctaaaagaaactcaatatgtgacag 55269153  T
Q  372 atcataaatcaaaagattaataatagtagtagatta 407  Q
    ||||||||||||||||||||||||||||||||||||    
T  55269154 atcataaatcaaaagattaataatagtagtagatta 55269189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 272 - 407
Target Start/End: Original strand, 55262349 - 55262489
Alignment:
Q  272 atataaaatagaagtaatggattatagttgctttcgtctcattcctccaaatttggatg-----agatgtggttccattgctaaaagaaactcactatgt 366  Q
    |||||||||| || |||| |||||| | ||||||| ||||||| || |||||| |||||     ||||||||||||||||||||||||||||||||||||    
T  55262349 atataaaatataaataatagattatggatgctttcatctcatttcttcaaattgggatgagatgagatgtggttccattgctaaaagaaactcactatgt 55262448  T
Q  367 gacagatcataaatcaaaagattaataatagtagtagatta 407  Q
    ||| ||||||||||||||| |||||||||||||||||||||    
T  55262449 gactgatcataaatcaaaatattaataatagtagtagatta 55262489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 29952537 - 29952612
Alignment:
Q  13 agaagaagaaacacacacaaaaacaaaaacgatatggttgaggaacgcactcctagagagtatgcaaccccatcta 88  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||| ||||| |||||||||||||||||||||||    
T  29952537 agaagaagaaacacacacaaaaacagaaacgatatagctgaggaacacactcttagagagtatgcaaccccatcta 29952612  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 25592429 - 25592353
Alignment:
Q  13 agaagaagaaacacacacaaaaacaaaaacgatatggttgaggaacgcactcctagagagtatgcaaccccatctac 89  Q
    |||||||||||| ||  ||| || | ||||||||||| |||||||  ||||| ||||||||||||  ||||||||||    
T  25592429 agaagaagaaacgcatgcaataatagaaacgatatggctgaggaatacactcttagagagtatgccgccccatctac 25592353  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 25950296 - 25950348
Alignment:
Q  40 aacgatatggttgaggaacgcactcctagagagtatgcaaccccatctacgga 92  Q
    |||||||||  |||||||||||||| || ||||||||||||||| ||||||||    
T  25950296 aacgatatgactgaggaacgcactcttaaagagtatgcaaccccttctacgga 25950348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 25785530 - 25785490
Alignment:
Q  52 gaggaacgcactcctagagagtatgcaaccccatctacgga 92  Q
    ||||||||||||| || ||||||||||| ||||||||||||    
T  25785530 gaggaacgcactcttaaagagtatgcaatcccatctacgga 25785490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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