View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15988_high_1 (Length: 814)
Name: NF15988_high_1
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_high_1 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 716; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 1 - 814
Target Start/End: Complemental strand, 47081682 - 47080852
Alignment:
| Q |
1 |
aaccgtgatgctccagcagatctcctctaaatctatgttgaatttgacagagcaaggtctgcttcttcaaaatgggaagagagattcagctatgaataaa |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
47081682 |
aaccgtgatgctccagcag-tctcctctaaatctatgttgaatttgacagagcaaggtctgcttcttcaaaatggaaacagagattcagctatgaataaa |
47081584 |
T |
|
| Q |
101 |
gacttgagagatgattcagaggagaatttggtctctaaggcatctatgcatgattctggcaactttgtgctttatgatgagaattctacagttatatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47081583 |
gacttgagagatgattcagaggagaatttggtctctaaggcatctatgcatgattctggcaactttgtgctttatgatgagaattctacagttatatggc |
47081484 |
T |
|
| Q |
201 |
aaagctttgatcacccaacagacaccatattaggaggtcagagtttgactactgctgatgattatttaatctctagtgtgtccgaatcagaccattctag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47081483 |
aaagctttgatcacccaacagacaccatattaggaggtcagagtttgactgctgctgatgattatttaatctctagtgtgtccgaatcagaccattctag |
47081384 |
T |
|
| Q |
301 |
tggacgtttctatcttggggtgcaaggtgatagaagcgttgctgcttaccctttttacagcttcagaagtgatgaggatgcttactgggattcaaacact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47081383 |
tggacgtttctatcttggggtgcaaggtgatagaagtgttgctgcttaccctttttacagcttcagaagtgatgaggatgcttactgggattcaaacact |
47081284 |
T |
|
| Q |
401 |
tcgcatcagaggtacagacaacagctcagtcttgacattaaaggctttctttgtgtaaatg------tttgtgatccttcaaatcgagcttacccttata |
494 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| |
|
|
| T |
47081283 |
tcgcatcagatgtacggacaacagctcagtcttgacattaaaggctttctttgtgtaaatgctgcaatttgtgatcctttaaatcgagtttacccttata |
47081184 |
T |
|
| Q |
495 |
------------ctgaatctcctgatcatcatagtcaatgtttcaactataccaataagcctagaaagaagtcaaacaacgcaacttcaatctaccgtgc |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47081183 |
gttcttgtacacctgaatctcctgatcatcatagtcaatgtttcaaccataccaataagcctagaaagaagtcaaacaacgcaacttcaatctaccgtgc |
47081084 |
T |
|
| Q |
583 |
aacacttgacgtagatggaaacttgagattgtatgaacaccaatttcattttgaaggcaataatagctctcgtgtggtaatgctgtggaaagcacttaat |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47081083 |
aacacttgacgtagatggaaacttgagattgtatgaacaccaatttcattttgaaggcaacaatagctctcgtgtggtaatgttgtggaaagcacttaat |
47080984 |
T |
|
| Q |
683 |
gagacatgtttagtgaaggggttttgtgggttgaacagttattgcacttccaacatcagcagtgatgctgtctgcaagtgttatcctggtttcatccttt |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47080983 |
gagacatgtttagtgaaggggttttgtgggttgaacagttattgcacttccaacatcagcagtgatgctgtctgcaagtgttatcctggtttcatccttt |
47080884 |
T |
|
| Q |
783 |
ccgagaccaaaagtaatcctaaattgcctatg |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
47080883 |
ccgagaccaaaagtaatcctaaattgcctatg |
47080852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 47060120 - 47060430
Alignment:
| Q |
1 |
aaccgtgatgctccagcagatctcctctaaatctatgttgaatttgacagagcaaggtctgcttcttcaaaatgggaagagagattcagctatgaataaa |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
47060120 |
aaccgtgatgctccagcag-tctcctctaaatctatgttgaatttgacagagcaaggtctgcttcttcaaaatggaaacagagattcagctatgaataaa |
47060218 |
T |
|
| Q |
101 |
gacttgagagatgattcagaggagaatttggtctctaaggcatctatgcatgattctggcaactttgtgctttatgatgagaattctacagttatatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47060219 |
gacttgagagatgattcagaggagaatttggtctctaaggcatctatgcatgattctggcaactttgtgctttatgatgagaattctacagttatatggc |
47060318 |
T |
|
| Q |
201 |
aaagctttgatcacccaacagacaccatattaggaggtcagagtttgactactgctgatgattatttaatctctagtgtgtccgaatcagaccattctag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| | ||||||||||| || |
|
|
| T |
47060319 |
aaagctttgatcacccaacagacaccatattaggaggtcagagtttg---actgctgatgattatttaatctctagtatatccaagtcagaccattcaag |
47060415 |
T |
|
| Q |
301 |
tggacgtttctatct |
315 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
47060416 |
gggatgtttctatct |
47060430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 520 - 784
Target Start/End: Original strand, 47060608 - 47060875
Alignment:
| Q |
520 |
atgtttcaactataccaataagcctagaaagaagtca---aacaacgcaacttcaatctaccgtgcaacacttgacgtagatggaaacttgagattgtat |
616 |
Q |
| |
|
|||| ||||| ||| |||||||| ||| ||||||| | |||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
47060608 |
atgtctcaacgatatcaataagcatagtaagaagttacacaacaacacaacttcaatctaccgtgcaacgtttgatgtagatggaaacttgagattgtat |
47060707 |
T |
|
| Q |
617 |
gaacaccaatttcattttgaaggcaataatagctctcgtgtggtaatgctgtggaaagcacttaatgagacatgtttagtgaaggggttttgtgggttga |
716 |
Q |
| |
|
|| ||||||||| | ||||| |||| |||||||| ||||||||||| ||||| ||||||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
47060708 |
gagcaccaatttgactttgagagcaagaatagctcgcgtgtggtaatcttgtggcaagcacttaatgacacttgtcaagtgaaggggttttgtgggttga |
47060807 |
T |
|
| Q |
717 |
acagttattgcacttccaacatcagcagtgatgctgtctgcaagtgttatcctggtttcatcctttcc |
784 |
Q |
| |
|
||||||||||| | | ||| || ||| |||||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
47060808 |
acagttattgctccttcaatatgagcggtgatgctgtatgcaaatgttatcctggtttcatcccttcc |
47060875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University