View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_high_15 (Length: 284)
Name: NF15988_high_15
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 116 - 259
Target Start/End: Original strand, 5065730 - 5065873
Alignment:
| Q |
116 |
agaagagaaaaatatttacaggattgagagtgctgtgtagtttgaagctttcttcaagcaatagtgattgttctttggtaagcctcaatttctttctagc |
215 |
Q |
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| T |
5065730 |
agaagagaaaaatatttacaggattgagagtgctgtgtagtttgaagctttcttcaagcaatagtgattgttctttggtaagcctcaatttctttctagc |
5065829 |
T |
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| Q |
216 |
atttgtagcatcttcatcttcatcactaactcttgaagaaaccc |
259 |
Q |
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| T |
5065830 |
atttgtagcatcttcatcttcatcactaactcttgaagaaaccc |
5065873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5065615 - 5065651
Alignment:
| Q |
1 |
aaagcttgtttttgtttctgaaaatcaaatccaacag |
37 |
Q |
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| T |
5065615 |
aaagcttgtttttgtttctgaaaatcaaatccaacag |
5065651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 40299727 - 40299683
Alignment:
| Q |
131 |
ttacaggattgagagtgctgtgtagtttgaagctttcttcaagca |
175 |
Q |
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| T |
40299727 |
ttacaggattgagagtgctgtgttctttgaagctttcttcaagca |
40299683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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