View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15988_high_16 (Length: 273)

Name: NF15988_high_16
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15988_high_16
NF15988_high_16
[»] chr3 (8 HSPs)
chr3 (19-240)||(36875602-36875822)
chr3 (19-93)||(33396685-33396759)
chr3 (99-260)||(33714789-33714950)
chr3 (26-260)||(37580675-37580915)
chr3 (177-260)||(36811039-36811122)
chr3 (182-260)||(33708991-33709069)
chr3 (182-260)||(37587571-37587649)
chr3 (39-74)||(37587418-37587453)
[»] chr7 (1 HSPs)
chr7 (39-260)||(18724216-18724451)
[»] chr1 (2 HSPs)
chr1 (182-252)||(52082593-52082663)
chr1 (182-252)||(52092789-52092859)
[»] chr8 (1 HSPs)
chr8 (184-252)||(17636420-17636488)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 36875822 - 36875602
Alignment:
Q  19 acatcaccatgttttcttttatgtttcctaatatgcagcttcttgatttgagctcttgtgacgacatatgtattgttaatgtgttaaagacatgttgtaa 118  Q
    |||||| ||||||| |||||| ||||||||| ||||| |||||||||||||||||||| || ||||||||||||| ||| |||| |||||  ||||||||    
T  36875822 acatcaacatgtttgcttttacgtttcctaacatgcaacttcttgatttgagctcttgcgatgacatatgtattggtaaagtgtcaaagatttgttgtaa 36875723  T
Q  119 tattaggcatttaaaatttcccttctgcccacaagctaagctatcttggaccaacgtcgaagcttccaaattggaggtgttggacttgtcaaattcaaga 218  Q
    |||||||||||| |||||  ||||||| |||| ||||||||||| || ||||||||| ||| |||||||  |||||||| || |||||||| | ||||||    
T  36875722 tattaggcattt-aaattcgccttctgtccacgagctaagctattttcgaccaacgttgaaccttccaatctggaggtggtgaacttgtcacactcaaga 36875624  T
Q  219 attgatggtgaagcattgtatg 240  Q
    || |||| | ||||| ||||||    
T  36875623 atcgatgatcaagcactgtatg 36875602  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 33396759 - 33396685
Alignment:
Q  19 acatcaccatgttttcttttatgtttcctaatatgcagcttcttgatttgagctcttgtgacgacatatgtattg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33396759 acatcaccatgttttcttttatgtttcctaatatgcagcttcttgatttgagctcttgtgacgacatatgtattg 33396685  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 260
Target Start/End: Original strand, 33714789 - 33714950
Alignment:
Q  99 gtgttaaagacatgttgtaatattaggcatttaaaatttcccttctgcccacaagctaagctatcttggaccaacgtcgaagcttccaaattggaggtgt 198  Q
    |||||||| | ||| |||||  |||||||||| || ||| |||||| ||||||| ||||||||| || || |||| | |||| ||||||| ||||||||     
T  33714789 gtgttaaatagatgctgtaagtttaggcatttgaactttgccttctacccacaacctaagctatttttgatcaactttgaagtttccaaactggaggtgc 33714888  T
Q  199 tggacttgtcaaattcaagaattgatggtgaagcattgtatgcaatctcaaagatttgccct 260  Q
    || |||||||||| ||||||||||||| ||  ||||||||||| || ||||||| |||||||    
T  33714889 tgaacttgtcaaactcaagaattgatgatggcgcattgtatgcgatttcaaagagttgccct 33714950  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 260
Target Start/End: Original strand, 37580675 - 37580915
Alignment:
Q  26 catgttttcttttatgtttcctaatatgcagcttcttgatttgagctcttgtgacgacat------atgtattgttaatgtgttaaagacatgttgtaat 119  Q
    ||||||| ||||  |||||||||||||||| ||||||||||||||||||||     ||||      | |||||| ||  |||||||||| |||| ||||     
T  37580675 catgtttgctttcctgtttcctaatatgcaacttcttgatttgagctcttgcttttacattaaagaaggtattgatatagtgttaaagaaatgtcgtaag 37580774  T
Q  120 attaggcatttaaaatttcccttctgcccacaagctaagctatcttggaccaacgtcgaagcttccaaattggaggtgttggacttgtcaaattcaagaa 219  Q
    ||||||||||| ||||||  |   |||| ||||||||| |||| || || ||||   |||||||||||| | ||||| ||| |||||||||| |||||||    
T  37580775 attaggcattttaaatttgtccggtgccgacaagctaatctatgtttgatcaactatgaagcttccaaactcgaggtattgaacttgtcaaactcaagaa 37580874  T
Q  220 ttgatggtgaagcattgtatgcaatctcaaagatttgccct 260  Q
    |||||| | ||| ||||||||  ||||||| ||||||||||    
T  37580875 ttgatgataaagtattgtatgtgatctcaatgatttgccct 37580915  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 36811039 - 36811122
Alignment:
Q  177 gaagcttccaaattggaggtgttggacttgtcaaattcaagaattgatggtgaagcattgtatgcaatctcaaagatttgccct 260  Q
    |||||||||||| ||||||||||| |||||||  ||||||||||||||  |  |||| ||||||||||||||||||||||||||    
T  36811039 gaagcttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaagatttgccct 36811122  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 33708991 - 33709069
Alignment:
Q  182 ttccaaattggaggtgttggacttgtcaaattcaagaattgatggtgaagcattgtatgcaatctcaaagatttgccct 260  Q
    ||||||| |||||||| || |||||||| | ||||||||||||| ||  |||||||||||||||||||||| |||||||    
T  33708991 ttccaaactggaggtgctgaacttgtcagactcaagaattgatgatggtgcattgtatgcaatctcaaagagttgccct 33709069  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 37587571 - 37587649
Alignment:
Q  182 ttccaaattggaggtgttggacttgtcaaattcaagaattgatggtgaagcattgtatgcaatctcaaagatttgccct 260  Q
    ||||||| ||||||| ||| |||||||| | ||||||||||||| | ||| ||||||||| ||||||||||||||||||    
T  37587571 ttccaaactggaggtattgaacttgtcacactcaagaattgatgataaagtattgtatgcgatctcaaagatttgccct 37587649  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 37587418 - 37587453
Alignment:
Q  39 atgtttcctaatatgcagcttcttgatttgagctct 74  Q
    ||||||||||||||||| ||||||||||||||||||    
T  37587418 atgtttcctaatatgcaacttcttgatttgagctct 37587453  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 260
Target Start/End: Original strand, 18724216 - 18724451
Alignment:
Q  39 atgtttcctaatatgcagcttcttgatttgagctcttgtgacgacatat----------gtattgttaatgtgttaaagacatgttgtaatattaggcat 128  Q
    ||||||||||||||| |||||||||||||||  |||||||| | |||||          |||||| ||| |||||||||| |||||||||||  ||||||    
T  18724216 atgtttcctaatatggagcttcttgatttgaattcttgtgatggcatatatgaatgaaggtattggtaaagtgttaaagaaatgttgtaataccaggcat 18724315  T
Q  129 ttaaaatttcccttctgcccacaagctaagctatcttggaccaacgtcgaagcttccaaattggaggtgttgg----acttgtcaaattcaagaattgat 224  Q
    || || ||| |||||||||||||||||||||  | ||||| |||| | |||||||||||| | ||||||||||    |||||||| | ||||||||||||    
T  18724316 ttgaactttgccttctgcccacaagctaagcatttttggatcaactttgaagcttccaaactagaggtgttggttgaacttgtcacactcaagaattgat 18724415  T
Q  225 ggtgaagcattgtatgcaatctcaaagatttgccct 260  Q
    | | ||| | ||||||| ||||||||||||| ||||    
T  18724416 gataaagtactgtatgcgatctcaaagattttccct 18724451  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 52082663 - 52082593
Alignment:
Q  182 ttccaaattggaggtgttggacttgtcaaattcaagaattgatggtgaagcattgtatgcaatctcaaaga 252  Q
    ||||||||||||||||||| ||||||||||  ||| |||||||| |||| |||||||||  ||||||||||    
T  52082663 ttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaaga 52082593  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 52092859 - 52092789
Alignment:
Q  182 ttccaaattggaggtgttggacttgtcaaattcaagaattgatggtgaagcattgtatgcaatctcaaaga 252  Q
    ||||||||||||||||||| ||||| ||||  ||| |||||||| |||  |||||||||  ||||||||||    
T  52092859 ttccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaaga 52092789  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 17636420 - 17636488
Alignment:
Q  184 ccaaattggaggtgttggacttgtcaaattcaagaattgatggtgaagcattgtatgcaatctcaaaga 252  Q
    ||||||||||||||||| |||||||| |  || || |||| | ||||||||||||||  ||||||||||    
T  17636420 ccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaaga 17636488  T

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