View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_high_17 (Length: 252)
Name: NF15988_high_17
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_high_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 51159927 - 51160166
Alignment:
| Q |
13 |
cataggcaaaaaactcaagcatgtataactaactattaacaactgatgtctgatcattgaccacaaaatacatgcatgcagtgaaaacaaaatagggtcc |
112 |
Q |
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| T |
51159927 |
cataggcaaaaaactcaagcatgtataactaactattaacaactgatgtctgatcattgaccacaaaatacatgcatgcagtgaaaacaaaatagggtcc |
51160026 |
T |
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| Q |
113 |
aattccaagggtctgttttagaaaatatatttggtttacaattaagggtctatttattttcttaaatgctagctaggaagaatgcagttttcaaaacatc |
212 |
Q |
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| T |
51160027 |
aattccaagggtctgttttagaaaatatatttggtttacaattaagggtctatttattttcttaaatgctagctaggaagaatgcagttttcaaaacatg |
51160126 |
T |
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| Q |
213 |
gaaaacaatgttttgatattttcaaaattccgaatatgtt |
252 |
Q |
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| T |
51160127 |
gaaaacaatgttttgatattttcaaaattctgaatatgtt |
51160166 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 16918086 - 16918032
Alignment:
| Q |
186 |
taggaagaatgcagttttcaaaacatcgaaaacaatgttttgatattttcaaaat |
240 |
Q |
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| T |
16918086 |
taggaagaatgcatttttaaaaacaatgaaaacagtgttttgaaattttcaaaat |
16918032 |
T |
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