View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15988_high_20 (Length: 239)

Name: NF15988_high_20
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15988_high_20
NF15988_high_20
[»] chr1 (17 HSPs)
chr1 (8-224)||(51160383-51160600)
chr1 (115-209)||(10199410-10199504)
chr1 (117-190)||(14629970-14630043)
chr1 (114-209)||(34405131-34405226)
chr1 (129-192)||(45975681-45975744)
chr1 (129-207)||(7472287-7472365)
chr1 (123-192)||(34290227-34290296)
chr1 (115-190)||(25479574-25479649)
chr1 (131-198)||(27820355-27820422)
chr1 (130-192)||(2777883-2777945)
chr1 (118-184)||(6102153-6102219)
chr1 (131-192)||(7137016-7137077)
chr1 (135-204)||(44422678-44422747)
chr1 (129-209)||(2294885-2294965)
chr1 (123-191)||(6279391-6279459)
chr1 (129-189)||(32113652-32113712)
chr1 (128-184)||(49373701-49373757)
[»] chr4 (14 HSPs)
chr4 (115-207)||(7694012-7694104)
chr4 (115-202)||(35064836-35064923)
chr4 (128-206)||(18628558-18628636)
chr4 (129-190)||(51630104-51630165)
chr4 (115-209)||(28300301-28300395)
chr4 (146-207)||(30581710-30581771)
chr4 (134-190)||(36048526-36048582)
chr4 (146-206)||(46715030-46715090)
chr4 (129-209)||(54325053-54325133)
chr4 (129-204)||(30207587-30207662)
chr4 (159-192)||(679246-679279)
chr4 (159-204)||(16200027-16200072)
chr4 (123-207)||(25332750-25332835)
chr4 (117-209)||(17884042-17884134)
[»] chr8 (19 HSPs)
chr8 (129-215)||(31862461-31862547)
chr8 (129-192)||(8062320-8062383)
chr8 (136-209)||(10075574-10075647)
chr8 (131-207)||(27028807-27028883)
chr8 (123-207)||(28769349-28769433)
chr8 (129-209)||(33714252-33714331)
chr8 (129-209)||(42215322-42215402)
chr8 (135-208)||(8062499-8062572)
chr8 (123-183)||(30277255-30277315)
chr8 (160-207)||(30013194-30013241)
chr8 (115-190)||(30389092-30389167)
chr8 (101-209)||(42215068-42215177)
chr8 (168-209)||(2482839-2482880)
chr8 (165-206)||(4390190-4390231)
chr8 (160-209)||(14905169-14905218)
chr8 (129-190)||(31705078-31705139)
chr8 (123-183)||(11188165-11188225)
chr8 (146-198)||(30627935-30627987)
chr8 (167-207)||(34080320-34080360)
[»] chr5 (14 HSPs)
chr5 (160-208)||(9106796-9106844)
chr5 (128-207)||(10272446-10272525)
chr5 (129-202)||(11104899-11104972)
chr5 (123-207)||(16889711-16889795)
chr5 (128-207)||(29659327-29659406)
chr5 (129-187)||(7984965-7985023)
chr5 (161-207)||(33234337-33234383)
chr5 (130-207)||(17368652-17368729)
chr5 (131-195)||(6593287-6593351)
chr5 (122-209)||(12425545-12425632)
chr5 (159-209)||(443909-443959)
chr5 (146-199)||(14716503-14716556)
chr5 (117-190)||(37588364-37588437)
chr5 (115-183)||(11707055-11707123)
[»] chr2 (22 HSPs)
chr2 (123-209)||(7103492-7103579)
chr2 (132-202)||(5133753-5133823)
chr2 (131-209)||(12464491-12464569)
chr2 (116-201)||(42419979-42420064)
chr2 (115-208)||(43911001-43911094)
chr2 (115-191)||(680495-680571)
chr2 (165-209)||(9551553-9551597)
chr2 (132-204)||(16503331-16503403)
chr2 (132-208)||(33941884-33941960)
chr2 (115-207)||(40158694-40158786)
chr2 (115-203)||(41817148-41817236)
chr2 (148-215)||(33502677-33502744)
chr2 (123-189)||(41032965-41033030)
chr2 (115-209)||(44438841-44438935)
chr2 (131-184)||(9174814-9174867)
chr2 (146-207)||(10143148-10143209)
chr2 (129-182)||(16398115-16398168)
chr2 (117-182)||(44443322-44443387)
chr2 (118-198)||(29628748-29628828)
chr2 (118-174)||(35379021-35379077)
chr2 (170-210)||(35486420-35486460)
chr2 (123-215)||(43141839-43141931)
[»] chr6 (10 HSPs)
chr6 (131-209)||(4006688-4006766)
chr6 (118-209)||(9093561-9093652)
chr6 (114-187)||(14492298-14492371)
chr6 (160-208)||(3155151-3155199)
chr6 (115-209)||(4420619-4420711)
chr6 (123-209)||(32848606-32848692)
chr6 (160-209)||(22742340-22742389)
chr6 (129-190)||(33787761-33787822)
chr6 (161-209)||(9604823-9604871)
chr6 (115-191)||(17241254-17241330)
[»] chr3 (11 HSPs)
chr3 (128-184)||(34924553-34924609)
chr3 (129-183)||(37138290-37138344)
chr3 (129-209)||(1816557-1816637)
chr3 (131-209)||(25453877-25453955)
chr3 (123-209)||(38462255-38462341)
chr3 (115-189)||(52440664-52440738)
chr3 (136-209)||(8933761-8933834)
chr3 (115-188)||(40665424-40665497)
chr3 (126-190)||(20502081-20502145)
chr3 (129-209)||(24887299-24887379)
chr3 (115-183)||(52412906-52412974)
[»] chr7 (8 HSPs)
chr7 (132-188)||(5628585-5628641)
chr7 (160-207)||(27481341-27481388)
chr7 (160-207)||(31771703-31771750)
chr7 (159-209)||(12110334-12110384)
chr7 (163-209)||(34083575-34083621)
chr7 (129-182)||(12792579-12792632)
chr7 (129-198)||(39907788-39907857)
chr7 (129-209)||(5369708-5369787)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 51160383 - 51160600
Alignment:
Q  8 agtggatagatacaatatgttaactttttat-ttatggtccctttggattgatttgtttaaacttatctattgacataaacaagacatctgggagagaac 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51160383 agtggatagatacaatatgttaactttttatgttatggtccctttggattgatttgtttaaacttatctattgacataaacaagacatctgggagagaac 51160482  T
Q  107 ttgtgaaaacatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgact 206  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51160483 ttgtgaaaacatgttaataatttgttttcagcttaatatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgact 51160582  T
Q  207 ttacattatagaagaaat 224  Q
    ||||||||||||||||||    
T  51160583 ttacattatagaagaaat 51160600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 10199410 - 10199504
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||| |||| |||||||||||||||| |||||| |||||| | ||| |||||||||| ||||||| | ||||||  ||| ||||||||||||    
T  10199410 acatgttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaaaagcttatcgattatacgaaaatagtttgacttta 10199504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 14629970 - 14630043
Alignment:
Q  117 atgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttata 190  Q
    ||||| |||| ||||||||||||||||  |||||| ||||  ||||| ||||||||||||||||||||||||||    
T  14629970 atgttcataagttgttttcagcttatttccataaagtctccaagatagcttatgaaaatagcttatagcttata 14630043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 34405226 - 34405131
Alignment:
Q  114 aacatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||| |||| || |||||||||| || |||| | | ||||||||||| |||||||||| |||||||| ||||||| ||||| ||| ||||||    
T  34405226 aacatgttcataagttattttcagctttttttcatcagcactctgagataatttatgaaaattgcttatagattatacaaaaacaatttaacttta 34405131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 45975744 - 45975681
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttataca 192  Q
    ||||||||||||||| ||||||| ||||  ||||| |||||||||| ||||| |||||||||||    
T  45975744 tgttttcagcttattttcataaattctccaagatagcttatgaaaacagcttgtagcttataca 45975681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 7472365 - 7472287
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    ||||||||||||||| |||||| |||||  ||||| |||||| ||| ||||||||| ||||||| ||||| ||| ||||    
T  7472365 tgttttcagcttattttcataagctctccaagatagcttatggaaacagcttatagattatacaaaaacaatttaactt 7472287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 34290296 - 34290227
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttataca 192  Q
    |||| |||||||||||||||| ||||||  |||   ||||| |||||||||| |||||||||||||||||    
T  34290296 ataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagcttataca 34290227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 25479649 - 25479574
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttata 190  Q
    ||||||| || | |||||||||||||||| |||||| ||||||  |||| |||||||||| | |||||||| ||||    
T  25479649 acatgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagcctata 25479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 27820355 - 27820422
Alignment:
Q  131 ttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaaca 198  Q
    ||||||||||||| ||||||| ||||  ||||| ||||| |||| ||| ||||||||||||| |||||    
T  27820355 ttttcagcttattttcataaattctccaagatagcttataaaaacagcatatagcttatacataaaca 27820422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 2777945 - 2777883
Alignment:
Q  130 gttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttataca 192  Q
    |||||||||||||| ||||||  ||||  || |||||||| |||| |||||||||||||||||    
T  2777945 gttttcagcttattttcataagttctccaagttaacttattaaaacagcttatagcttataca 2777883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 6102219 - 6102153
Alignment:
Q  118 tgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatag 184  Q
    |||| |||| ||||||||||||||||  |||||| ||||  ||||| |||||||||| |||||||||    
T  6102219 tgttcataaattgttttcagcttatttccataaattctcccagatagcttatgaaaacagcttatag 6102153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 7137016 - 7137077
Alignment:
Q  131 ttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttataca 192  Q
    ||||||||||||| ||||||  ||||  ||||| |||||||||| ||||||||| |||||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatgaaaacagcttatagattataca 7137077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 44422747 - 44422678
Alignment:
Q  135 cagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttga 204  Q
    ||||||||| |||||| |||||   |||| ||||| ||||||||||||||||||||   |||||||||||    
T  44422747 cagcttattttcataagctctccaggatagcttataaaaatagcttatagcttatatgaaaacagtttga 44422678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 2294965 - 2294885
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||| |||||| || |||  ||||  |||||  |||||||||||||||||||||||| || ||||| ||| ||||||    
T  2294965 tgttttcaccttattttcgtaagttctccaagatagtttatgaaaatagcttatagcttatccaaaaacaatttaacttta 2294885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 6279459 - 6279391
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatac 191  Q
    |||| ||||||||||| ||||  ||||| ||||||  |||| ||||||||||||| ||| |||||||||    
T  6279459 ataagttgttttcagcgtatttccataagctctctaggatagcttatgaaaatagtttaaagcttatac 6279391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 32113712 - 32113652
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttat 189  Q
    ||||||||||||||| ||||||| ||||  | |||||||||||||| || |||||| ||||    
T  32113712 tgttttcagcttattttcataaaatctccaacataacttatgaaaacagtttataggttat 32113652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 49373701 - 49373757
Alignment:
Q  128 ttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatag 184  Q
    |||||||||||||||| |||||| |||| |  ||||||||||||| |||| ||||||    
T  49373701 ttgttttcagcttattttcataagctctattggataacttatgaacataggttatag 49373757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 7694012 - 7694104
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    ||||||| |||| ||||||||||||||||  |||||||||||   ||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  7694012 acatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagcttatacaaaaacagtttgactt 7694104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 35064923 - 35064836
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagttt 202  Q
    ||||||| |||| ||||||||||||||||  |||||||||||   |||| |||||||||| ||| |||||| |||||| |||||||||    
T  35064923 acatgtttataaattgttttcagcttatttccataaactctccatgatatcttatgaaaacagcatatagcctatacaaaaacagttt 35064836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 18628558 - 18628636
Alignment:
Q  128 ttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgact 206  Q
    ||||||||||||||||  ||||| |||||  |||||||||||||||| || ||||| |||||| | |||||||||||||    
T  18628558 ttgttttcagcttatttccataagctctccaagataacttatgaaaacagtttataacttatataaaaacagtttgact 18628636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 51630165 - 51630104
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttata 190  Q
    ||||||||||||||| ||||||| |||   ||||| ||||||||||||||||||||||||||    
T  51630165 tgttttcagcttattttcataaattcttcaagatagcttatgaaaatagcttatagcttata 51630104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 28300301 - 28300395
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||  ||| ||||||||| |||||| |||||| ||||   ||||| | ||||||||||| |||||||||||||| ||||| ||| ||||||    
T  28300301 acatgttcttaagttgttttcaacttattttcataagctcttcaagatagcctatgaaaatagtttatagcttatacaaaaacaatttaacttta 28300395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 30581710 - 30581771
Alignment:
Q  146 cataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||||||||||  ||||||||||| |||| ||||||||||||||||  ||| ||||||||||    
T  30581710 cataaactctccaagataacttattaaaacagcttatagcttatacgaaaatagtttgactt 30581771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 36048582 - 36048526
Alignment:
Q  134 tcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttata 190  Q
    ||||||||||  ||||| |||||| ||||| ||| ||||||||||||||||||||||    
T  36048582 tcagcttatttccataagctctctaagatagcttttgaaaatagcttatagcttata 36048526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 46715030 - 46715090
Alignment:
Q  146 cataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgact 206  Q
    |||||||||||  ||||||||||||||||||| || ||||||||| | ||||| |||||||    
T  46715030 cataaactctccaagataacttatgaaaatagtttttagcttatataaaaacaatttgact 46715090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 54325053 - 54325133
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||||| ||||   |||||||||||   |||| ||| ||||||||||||||||||||||   ||||||||||||||||    
T  54325053 tgttttcagtttatctccataaactctccatgatagcttttgaaaatagcttatagcttatatgaaaacagtttgacttta 54325133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 30207587 - 30207662
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttga 204  Q
    |||||||||||||||  ||||| |||||| || || |||||||||| | |||||||||||||   |||||||||||    
T  30207587 tgttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaacagtttga 30207662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 679279 - 679246
Alignment:
Q  159 agataacttatgaaaatagcttatagcttataca 192  Q
    |||||||||||||||| |||||||||||||||||    
T  679279 agataacttatgaaaacagcttatagcttataca 679246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 16200027 - 16200072
Alignment:
Q  159 agataacttatgaaaatagcttatagcttatacagaaacagtttga 204  Q
    ||||| |||||||||| |||||||||| |||||| |||||||||||    
T  16200027 agatagcttatgaaaacagcttatagcatatacaaaaacagtttga 16200072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 25332835 - 25332750
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctc-tgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||| |||||||||||||||| ||||||  |||  | ||||| ||||| ||||||||||| |||||||||| ||||| ||| ||||    
T  25332835 ataagttgttttcagcttattttcataagttctgataagatagcttataaaaatagcttagagcttatacaaaaacaatttaactt 25332750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 17884134 - 17884042
Alignment:
Q  117 atgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||| |||| |||||||||||| ||| |||||| |||||  | ||| |||||||||| | || ||| |||||||| ||||| ||| ||||||    
T  17884134 atgttcataagttgttttcagctaattttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaaacaatttaacttta 17884042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 31862547 - 31862461
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactttacattat 215  Q
    ||||||||||||||| |||||| ||||||  ||||||||||||||| | ||||||||||||||   || |||||||||||| |||||    
T  31862547 tgttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttatacgagaatagtttgactttatattat 31862461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 8062383 - 8062320
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttataca 192  Q
    |||||||||||||||  ||||| |||||| ||||| |||||||||| |||||||||||||||||    
T  8062383 tgttttcagcttatttccataatctctctaagatagcttatgaaaacagcttatagcttataca 8062320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 10075574 - 10075647
Alignment:
Q  136 agcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||| |||||| ||||||  |||| ||||||||||||||||||| |||||| | ||| ||||||||||||    
T  10075574 agcttattttcataagctctctaggatagcttatgaaaatagcttataacttatataaaaatagtttgacttta 10075647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 27028883 - 27028807
Alignment:
Q  131 ttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    ||||||||||||| |||||| |||||  ||||| |||||||||| |||||||||| |||||| ||||| ||| ||||    
T  27028883 ttttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagcatatacacaaacaatttaactt 27028807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 28769349 - 28769433
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||| ||||||||||||||||  |||||||||||  | ||| |||||||||| |||||||||||||||   ||| ||||||||||    
T  28769349 ataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaatagtttgactt 28769433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 33714252 - 33714331
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||||||||||| | |||| |||||  ||||| |||||||||||||||||||| || |||| ||| ||||||||||||    
T  33714252 tgttttcagcttatttttataagctctcccagatagcttatgaaaatagcttatagattgtaca-aaatagtttgacttta 33714331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 42215322 - 42215402
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||||||||||  ||||| |||||   |||| | ||||||||||| |||||| ||||||| ||||||||||||||||    
T  42215322 tgttttcagcttatttacataagctctccaggatagcatatgaaaataggttatagattatacaaaaacagtttgacttta 42215402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 8062572 - 8062499
Alignment:
Q  135 cagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttt 208  Q
    ||||||||| ||||||||||||| ||||| ||||||| || | |||||||||||||   ||||| |||||||||    
T  8062572 cagcttattttcataaactctctaagatagcttatgagaacatcttatagcttatatgaaaacaatttgacttt 8062499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 30277255 - 30277315
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttata 183  Q
    |||| ||||||||||||||||  ||||||||||||  |||| |||||||||| ||||||||    
T  30277255 ataagttgttttcagcttatttccataaactctctaggatagcttatgaaaacagcttata 30277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 30013241 - 30013194
Alignment:
Q  160 gataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||| |||||||||| |||||||||||||||  |||||||||||||||    
T  30013241 gatagcttatgaaaacagcttatagcttatatggaaacagtttgactt 30013194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 30389167 - 30389092
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttata 190  Q
    ||||||| |||| |||||||||||||||| ||||||  |||||  || | |||||||||| ||| |||||||||||    
T  30389167 acatgttcataagttgttttcagcttattttcataagttctctaggaaagcttatgaaaacagcgtatagcttata 30389092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 42215068 - 42215177
Alignment:
Q  101 gagaacttgtgaaaaca--tgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaaca 198  Q
    |||||||| ||||||||  |||| |||| ||||||||||||||||  ||||| |||||  ||||| ||||||||||||  |||||| | ||||  |||||    
T  42215068 gagaacttatgaaaacacatgttcataagttgttttcagcttatttacataagctctccaagatagcttatgaaaata-tttatagatgatacgaaaaca 42215166  T
Q  199 gtttgacttta 209  Q
     ||||||||||    
T  42215167 atttgacttta 42215177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 2482880 - 2482839
Alignment:
Q  168 atgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||    
T  2482880 atgaaaacagcttatagcttatacaaaaacattttgacttta 2482839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 4390231 - 4390190
Alignment:
Q  165 cttatgaaaatagcttatagcttatacagaaacagtttgact 206  Q
    |||||||||||||||||||| |||| || |||||||||||||    
T  4390231 cttatgaaaatagcttatagattatgcaaaaacagtttgact 4390190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 14905218 - 14905169
Alignment:
Q  160 gataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||||||||||||||||| || ||  ||| ||||||||||||||||    
T  14905218 gataacttatgaaaatagcttaaagattggacaaaaacagtttgacttta 14905169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 31705139 - 31705078
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttata 190  Q
    |||||||||||||||  |||||||||||   || | |||||||||| |||||||||||||||    
T  31705139 tgttttcagcttatttccataaactctcaaggacagcttatgaaaacagcttatagcttata 31705078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 11188165 - 11188225
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttata 183  Q
    |||| |||||||||| |||||| ||||||||||||  |||| ||||| ||||||| |||||    
T  11188165 ataacttgttttcagtttattaccataaactctctaggatagcttatcaaaatagtttata 11188225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 30627935 - 30627987
Alignment:
Q  146 cataaactctctgagataacttatgaaaatagcttatagcttatacagaaaca 198  Q
    ||||| |||||| |||||||||||||||| | ||||||||||| ||| |||||    
T  30627935 cataagctctctaagataacttatgaaaacaacttatagcttacacataaaca 30627987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 34080320 - 34080360
Alignment:
Q  167 tatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||||||| |||||||||||||||| | |||||||||||||    
T  34080320 tatgaaaacagcttatagcttatacggtaacagtttgactt 34080360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 9106844 - 9106796
Alignment:
Q  160 gataacttatgaaaatagcttatagcttatacagaaacagtttgacttt 208  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  9106844 gataacttatgaaaatagcttatagattatacaaaaacagtttgacttt 9106796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 10272446 - 10272525
Alignment:
Q  128 ttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||||||||||||||| ||||||||||||  ||||  |||||||||| | ||||||||||||||  ||||| ||||||||    
T  10272446 ttgttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaacaatttgactt 10272525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 11104972 - 11104899
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagttt 202  Q
    |||||||||||||||  ||||| ||||   |||||||||||||||||||||||||| ||||||| | |||||||    
T  11104972 tgttttcagcttatttccataagctcttgcagataacttatgaaaatagcttatagattatacaaacacagttt 11104899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 16889795 - 16889711
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||| |||||||||| |||||  ||||||||||||   ||| |||||||||| |||||||||||| || | ||||||||||||||    
T  16889795 ataagttgttttcagattatttccataaactctctagcatagcttatgaaaacagcttatagcttctataaaaacagtttgactt 16889711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 29659406 - 29659327
Alignment:
Q  128 ttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    ||||||||||||||||   ||||||||||| |||||||||||||||| | |||||| ||| || || || ||||||||||    
T  29659406 ttgttttcagcttatttatataaactctctaagataacttatgaaaacaacttataacttgtataggaatagtttgactt 29659327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 7985023 - 7984965
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagctt 187  Q
    ||||||||||||||| ||||||| ||||  ||||| |||||||||| ||||||||||||    
T  7985023 tgttttcagcttattttcataaattctccaagatagcttatgaaaaaagcttatagctt 7984965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 33234383 - 33234337
Alignment:
Q  161 ataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  33234383 ataacttacgaaaatagcttatagcttatataaaaacagtttgactt 33234337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 17368729 - 17368652
Alignment:
Q  130 gttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    ||||||||||||||  ||||| |||||  ||||| |||||||||| | ||||||| ||| ||| ||||||||||||||    
T  17368729 gttttcagcttatttccataacctctccaagatagcttatgaaaacaacttatagattacacaaaaacagtttgactt 17368652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 6593351 - 6593287
Alignment:
Q  131 ttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaa 195  Q
    ||||||||||||| |||||| |||||| || || ||||| |||| |||||||||| |||||||||    
T  6593351 ttttcagcttattttcataagctctctaaggtagcttatcaaaacagcttatagcctatacagaa 6593287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 12425632 - 12425545
Alignment:
Q  122 aataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||| ||||||||| |||||| ||||||  ||||  ||||| ||| |||||| ||||||||||||||||  ||||| ||| ||||||    
T  12425632 aataagttgttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaacttta 12425545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 443959 - 443909
Alignment:
Q  159 agataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||| |||||||||| | ||||||||||||||| |||| |||||||||||    
T  443959 agatagcttatgaaaacatcttatagcttatacaaaaactgtttgacttta 443909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 14716503 - 14716556
Alignment:
Q  146 cataaactctctgagataacttatgaaaatagcttatagcttatacagaaacag 199  Q
    ||||||||||  | ||||||||||||||| || |||||||||||| ||||||||    
T  14716503 cataaactctacgggataacttatgaaaacagtttatagcttatatagaaacag 14716556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 37588364 - 37588437
Alignment:
Q  117 atgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttata 190  Q
    ||||||||||  |||||||||||||||  ||||| |||||    |||||||||||||| | |||||||||||||    
T  37588364 atgttaataagctgttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttata 37588437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 11707123 - 11707055
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttata 183  Q
    ||||||| |||| |||||||||||||||| ||| || ||||   ||||| |||||||||| ||||||||    
T  11707123 acatgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 7103492 - 7103579
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaat-agcttatagcttatacagaaacagtttgacttta 209  Q
    |||| ||||||| |||||||| ||| ||||||||| ||||| ||||||||||  |||||||||||||||   ||||||||||||||||    
T  7103492 ataagttgtttttagcttattttcacaaactctctaagatagcttatgaaaaacagcttatagcttatattaaaacagtttgacttta 7103579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 5133823 - 5133753
Alignment:
Q  132 tttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagttt 202  Q
    ||||||||||||  ||||| |||||| ||||||||| |||||| |||||||| |||||| | |||||||||    
T  5133823 tttcagcttatttccataagctctcttagataacttttgaaaacagcttatatcttatataaaaacagttt 5133753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 12464491 - 12464569
Alignment:
Q  131 ttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||||||||| ||| ||  ||||  ||||| ||||||||||||||||||||| |||||| ||||| ||| ||||||    
T  12464491 ttttcagcttattttcacaagttctccaagatagcttatgaaaatagcttatagcatatacaaaaacaatttaacttta 12464569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 42420064 - 42419979
Alignment:
Q  116 catgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtt 201  Q
    |||||| |||| |||||||||||| |||  ||||| || ||   |||| |||||||||||||||||||| ||||||| ||||||||    
T  42420064 catgttcataaattgttttcagctcatttccataagctatccaggatagcttatgaaaatagcttatagattatacaaaaacagtt 42419979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 43911001 - 43911094
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttt 208  Q
    ||||||| |||| |||||||||||||||||||| || || ||  ||||| ||| |||||| | ||||| |||||||| |||||| ||| |||||    
T  43911001 acatgttcataagttgttttcagcttattatcacaagctttccaagatagcttttgaaaacaacttatggcttatacggaaacaatttaacttt 43911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 680571 - 680495
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatac 191  Q
    ||||||| ||||  ||||||||||||||| ||| ||  |||   ||||| |||||||||||||||||||||||||||    
T  680571 acatgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttatac 680495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 9551597 - 9551553
Alignment:
Q  165 cttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||    
T  9551597 cttatgaaaataggttatagtttatacaaaaacagtttgacttta 9551553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 16503403 - 16503331
Alignment:
Q  132 tttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttga 204  Q
    |||||||||||| |||||| |||||  ||||||||||||| || | |||||||||||||  ||||| ||||||    
T  16503403 tttcagcttattttcataacctctccaagataacttatgagaagaacttatagcttatatggaaactgtttga 16503331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 33941960 - 33941884
Alignment:
Q  132 tttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttt 208  Q
    ||||| |||||||||||||||||||  ||||| |||||||||| |  ||||| |||||||| ||||| ||| |||||    
T  33941960 tttcaacttattatcataaactctccaagatagcttatgaaaacaagttataacttatacaaaaacaattttacttt 33941884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 40158786 - 40158694
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    ||||||| |||| |||||||||||||| |  ||||| |||||    |||||||||||||| | ||||| ||||||||  ||||||||||||||    
T  40158786 acatgtttataagttgttttcagcttaattacataagctctccagaataacttatgaaaacaacttattgcttatacgaaaacagtttgactt 40158694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 41817236 - 41817148
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttg 203  Q
    ||||||| |||||||||||||||||||||  ||||| |||||   ||||  |||||||||||||||| |  ||||||| ||| ||||||    
T  41817236 acatgttgataatttgttttcagcttatttccataagctctccaggatagtttatgaaaatagcttacacattatacaaaaatagtttg 41817148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 33502744 - 33502677
Alignment:
Q  148 taaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactttacattat 215  Q
    ||||||||||  |||||||||| |||| |||||||||||||| || ||| | ||||||||||| ||||    
T  33502744 taaactctctaggataacttataaaaacagcttatagcttatgcaaaaagaatttgactttactttat 33502677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 41032965 - 41033030
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttat 189  Q
    |||| ||||||||||||||||  |||||||||| | |||||| |||||||||| |||| ||||||||    
T  41032965 ataagttgttttcagcttatttccataaactctataagataa-ttatgaaaatcgcttgtagcttat 41033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 44438841 - 44438935
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||| ||||  |||||||||||||||  || ||  ||||   ||||||||||||| | ||||||| |||| |||| ||||||||||||||||    
T  44438841 acatgttcataacctgttttcagcttatttccacaagatctccaggataacttatgaagacagcttatggcttgtacaaaaacagtttgacttta 44438935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 9174867 - 9174814
Alignment:
Q  131 ttttcagcttattatcataaactctctgagataacttatgaaaatagcttatag 184  Q
    ||||||||||||| |||||| |||| | ||||| |||||||||| |||||||||    
T  9174867 ttttcagcttattttcataagctctgtaagatagcttatgaaaacagcttatag 9174814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 10143209 - 10143148
Alignment:
Q  146 cataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||||||||||   |||| |||||||||| | ||||||||||||| | ||||||||||||||    
T  10143209 cataaactctccatgatagcttatgaaaaaaacttatagcttatataaaaacagtttgactt 10143148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 16398168 - 16398115
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttat 182  Q
    ||||||||||||||| ||||||  ||||  | ||||||||||||||||||||||    
T  16398168 tgttttcagcttattttcataagttctccaacataacttatgaaaatagcttat 16398115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 44443387 - 44443322
Alignment:
Q  117 atgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttat 182  Q
    ||||| |||| |||||||||||||||| |||||  |||||  ||||| ||||||||||||| ||||    
T  44443387 atgttcataagttgttttcagcttattttcatatgctctcaaagatagcttatgaaaatagattat 44443322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 29628748 - 29628828
Alignment:
Q  118 tgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaaca 198  Q
    |||| |||| ||||||||||||||||  |||||| | ||  ||||| ||||||| || | ||||||||||||||| |||||    
T  29628748 tgttcataaattgttttcagcttatttccataaattttccaagatagcttatgagaacaacttatagcttatacaaaaaca 29628828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 35379021 - 35379077
Alignment:
Q  118 tgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaa 174  Q
    |||| |||| |||||||||||||||| |||||| |||||  ||||| ||||||||||    
T  35379021 tgttcataagttgttttcagcttattttcataagctctccaagatagcttatgaaaa 35379077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 35486420 - 35486460
Alignment:
Q  170 gaaaatagcttatagcttatacagaaacagtttgactttac 210  Q
    ||||| ||||||||| ||||||| |||||||||||||||||    
T  35486420 gaaaacagcttatagattatacaaaaacagtttgactttac 35486460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 43141931 - 43141839
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgactttacattat 215  Q
    |||| |||||||||  |||||  ||||||||||    |||| |||||||||| | |||||||||||||  |||||| ||||||||||| ||||    
T  43141931 ataagttgttttcattttatttccataaactcttcaggatagcttatgaaaacatcttatagcttatatggaaacaatttgactttactttat 43141839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 4006766 - 4006688
Alignment:
Q  131 ttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||||||||| |||||| ||||| | |||| |||||||||| | ||||||||||||| | ||||| ||||||||||    
T  4006766 ttttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatataaaaacaatttgacttta 4006688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 9093561 - 9093652
Alignment:
Q  118 tgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||||  ||||||||||||||| || |||  ||||| ||| | |||||||||| ||||||||||||||||  ||||| ||| ||||||    
T  9093561 tgttaataacctgttttcagcttattttcttaagttctctaagacagcttatgaaaacagcttatagcttatacgaaaacaatttaacttta 9093652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 14492371 - 14492298
Alignment:
Q  114 aacatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagctt 187  Q
    ||||| || |||| |||||||||||| |||  || |||||||||  ||||||||||||||| ||||||||||||    
T  14492371 aacatattcataaattgttttcagctgatttccacaaactctctaggataacttatgaaaacagcttatagctt 14492298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 3155199 - 3155151
Alignment:
Q  160 gataacttatgaaaatagcttatagcttatacagaaacagtttgacttt 208  Q
    |||| |||||||||||||||||||| |||||  ||||||||||||||||    
T  3155199 gatatcttatgaaaatagcttataggttatatggaaacagtttgacttt 3155151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 4420711 - 4420619
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||| ||||  |||||||||||||||  ||||| |||||  ||||| |||| ||||||| ||  ||||||||||| ||| ||||||||||||    
T  4420711 acatgttcataagctgttttcagcttatttccataagctctccaagatagcttaggaaaataact--tagcttatacaaaaatagtttgacttta 4420619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 32848606 - 32848692
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||||| |||| ||||||||||||| |||||  ||||||| |||||||| |  ||||| ||||||   |||||| |||||||||    
T  32848606 ataatttgtgttcaacttattatcataagctctccaagataacatatgaaaaaaatttataacttatatgaaaacagattgacttta 32848692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 22742389 - 22742340
Alignment:
Q  160 gataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||||| ||||||||||||||||||||   ||||| ||||||||||    
T  22742389 gataacttataaaaatagcttatagcttatatgaaaacaatttgacttta 22742340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 33787761 - 33787822
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttata 190  Q
    |||||||||| ||||  ||||| |||||  |||||||||||||||| |||||||| ||||||    
T  33787761 tgttttcagcctatttccataagctctccaagataacttatgaaaacagcttataacttata 33787822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 9604871 - 9604823
Alignment:
Q  161 ataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||||||||| ||||||||||||||||| ||| | ||| ||||||    
T  9604871 ataacttatgaaaacagcttatagcttatacaaaaataattttacttta 9604823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 17241254 - 17241330
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatac 191  Q
    ||||||| |||| ||||||||| ||||||  |||||||||||  ||||| || ||||||||  ||||||| ||||||    
T  17241254 acatgttcataagttgttttcaacttatttccataaactctccaagatagctaatgaaaatgacttatagattatac 17241330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 34924553 - 34924609
Alignment:
Q  128 ttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatag 184  Q
    |||||||||||||||| |||||| |||||| ||||| ||||||||||||||| ||||    
T  34924553 ttgttttcagcttattttcataagctctctaagatagcttatgaaaatagctcatag 34924609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 37138344 - 37138290
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttata 183  Q
    ||||||||||||||| || |||||||||| ||||| |||||||||||| ||||||    
T  37138344 tgttttcagcttattttcctaaactctctaagatagcttatgaaaataacttata 37138290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 1816637 - 1816557
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||||||||||| | |||| |||||    ||| |||||||||| | |||||| |||||||| ||||||||||||||||    
T  1816637 tgttttcagcttattttgataagctctccagtatagcttatgaaaacaacttatatcttatacaaaaacagtttgacttta 1816557  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 25453877 - 25453955
Alignment:
Q  131 ttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||||||||| |||||| || ||   ||||  |||||||||||| |||||| ||||||  ||||||||||||||||    
T  25453877 ttttcagcttattttcataagctttccaggatagtttatgaaaataggttataggttatacgaaaacagtttgacttta 25453955  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 38462341 - 38462255
Alignment:
Q  123 ataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||| ||||||||||||||||  ||||| || |||  |||| |||||||||| || ||||||| ||||   ||||||||||||||||    
T  38462341 ataagttgttttcagcttatttccataagctatcttggatagcttatgaaaacagtttatagcatatatgaaaacagtttgacttta 38462255  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 52440664 - 52440738
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttat 189  Q
    ||||||| |||| ||||||||| || ||| ||||||  |||   |||||| ||||||||||||||||||||||||    
T  52440664 acatgttcataagttgttttcaactaattttcataagttcttcaagataaattatgaaaatagcttatagcttat 52440738  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 8933834 - 8933761
Alignment:
Q  136 agcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||| |||||| |||||  |||||||||||||||| | | || ||||| |||| ||| ||||||||||||    
T  8933834 agcttattttcataagctctccaagataacttatgaaaacaacctagagcttctacaaaaatagtttgacttta 8933761  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 40665497 - 40665424
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagctta 188  Q
    ||||||| ||||  ||||||||||||||| | |||| |||||  |||||||||||||||| | |||||| ||||    
T  40665497 acatgttcataagctgttttcagcttatttttataagctctccaagataacttatgaaaacatcttataactta 40665424  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 20502081 - 20502145
Alignment:
Q  126 atttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttata 190  Q
    |||||||||||||||||| |||||| ||||    |||| |||||||||| |||||||||| ||||    
T  20502081 atttgttttcagcttattctcataagctcttcaggatagcttatgaaaacagcttatagcgtata 20502145  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 24887299 - 24887379
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||||||||||  ||||| |||||   |||| |||||||||| ||||| |||||||||   | ||||||||||||||    
T  24887299 tgttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagcttatatgaatacagtttgacttta 24887379  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 52412906 - 52412974
Alignment:
Q  115 acatgttaataatttgttttcagcttattatcataaactctctgagataacttatgaaaatagcttata 183  Q
    ||||||| ||||  |||||||||||||||  ||||  ||||||  || |||||||||||||||||||||    
T  52412906 acatgtttataagctgttttcagcttatttccatatgctctctaggacaacttatgaaaatagcttata 52412974  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 5628585 - 5628641
Alignment:
Q  132 tttcagcttattatcataaactctctgagataacttatgaaaatagcttatagctta 188  Q
    |||||||||||| |||||| ||||||| |||| |||||||||| |||||||| ||||    
T  5628585 tttcagcttattttcataagctctctgtgatatcttatgaaaacagcttatatctta 5628641  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 27481341 - 27481388
Alignment:
Q  160 gataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||| |||||||||||| |||||||||||||  |||||||||||||||    
T  27481341 gatagcttatgaaaataacttatagcttatatggaaacagtttgactt 27481388  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 31771750 - 31771703
Alignment:
Q  160 gataacttatgaaaatagcttatagcttatacagaaacagtttgactt 207  Q
    |||||| |||||||| ||||||||||||||||| ||||||||| ||||    
T  31771750 gataacatatgaaaacagcttatagcttatacaaaaacagtttaactt 31771703  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 12110384 - 12110334
Alignment:
Q  159 agataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||| |||||||||| ||||||||||||||||  ||||| ||||||||||    
T  12110384 agatagcttatgaaaacagcttatagcttataccaaaacaatttgacttta 12110334  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 34083575 - 34083621
Alignment:
Q  163 aacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    |||||||||||| ||||||||||||||||| ||||| ||| ||||||    
T  34083575 aacttatgaaaacagcttatagcttatacacaaacaatttaacttta 34083621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 12792579 - 12792632
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttat 182  Q
    ||||||||||||||| |||||| ||||   ||||| ||||||||||||||||||    
T  12792579 tgttttcagcttattttcataagctcttcaagatagcttatgaaaatagcttat 12792632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 39907857 - 39907788
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaaca 198  Q
    ||||||||||||||| |||| |  ||||| |||||  ||||||||| || |||||||||||||| |||||    
T  39907857 tgttttcagcttattttcattagttctctaagatagtttatgaaaacagtttatagcttatacaaaaaca 39907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 5369708 - 5369787
Alignment:
Q  129 tgttttcagcttattatcataaactctctgagataacttatgaaaatagcttatagcttatacagaaacagtttgacttta 209  Q
    ||||||||||||  | |||||| | ||||| |||| |||||||||| |||||||||| ||||   ||||||||||||||||    
T  5369708 tgttttcagctttatttcataagc-ctctgggatagcttatgaaaacagcttatagcatatatgaaaacagtttgacttta 5369787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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